Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012262.1 Corchorus olitorius cultivar O-4 contig12295, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7189
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29


Found at i:3971 original size:21 final size:22

Alignment explanation


    Indices: 3925--3976  Score: 54
    Period size: 21  Copynumber: 2.5  Consensus size: 22

       3915 TTATGTGAAC

                    *          *  
       3925 AATAAA-ATAATTAAACAAGAA
          1 AATAAATAAAATTAAACAACAA

                           *      
       3946 AAT-AATAAAATTAAGCAACAA
          1 AATAAATAAAATTAAACAACAA

            *         
       3967 GATAAATAAA
          1 AATAAATAAA

       3977 TACTCCAATC


Statistics
Matches: 25,  Mismatches: 4, Indels: 3
        0.78            0.12        0.09

Matches are distributed among these distances:
  20    2  0.08
  21   17  0.68
  22    6  0.24

ACGTcount: A:0.69, C:0.06, G:0.06, T:0.19


Consensus pattern (22 bp):   
AATAAATAAAATTAAACAACAA
Done.