Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012263.1 Corchorus olitorius cultivar O-4 contig12296, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7523
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.29


Found at i:2844 original size:3 final size:3

Alignment explanation


    Indices: 2836--2876  Score: 82
    Period size: 3  Copynumber: 13.7  Consensus size: 3

       2826 GTATTATCAA

                                                                  
       2836 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
          1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA

       2877 CTTATTTTTA


Statistics
Matches: 38,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   38  1.00

ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32


Consensus pattern (3 bp):   
AAT

Done.