Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012264.1 Corchorus olitorius cultivar O-4 contig12297, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40935

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1248--1306
29
2.0
29
100
0
118
32
16
20
30
1.95
3343--3367
13
1.9
13
100
0
50
84
0
16
0
0.63
4304--4332
2
14.5
2
100
0
58
51
0
0
48
1.00
6480--6505
6
4.3
6
100
0
52
84
15
0
0
0.62
10295--11473
331
3.5
331
81
7
1388
35
17
15
32
1.91
11521--11703
98
1.9
97
90
2
296
54
3
8
33
1.48
11835--12037
22
9.2
22
71
9
94
38
15
8
37
1.77
12993--13045
2
29.0
2
75
17
53
52
0
3
43
1.19
12996--13045
5
10.0
5
83
12
59
54
0
4
42
1.19
13251--13417
60
2.8
59
83
9
203
36
13
17
32
1.89
13314--13413
31
3.3
31
69
8
89
42
13
17
28
1.86
13460--13619
60
2.7
60
78
7
155
30
16
14
39
1.88
13544--13619
31
2.6
29
79
12
82
30
15
15
38
1.89
14546--14762
107
2.0
109
90
1
348
19
14
23
42
1.88
15565--15609
2
22.5
2
91
8
74
46
0
2
51
1.13
15557--15605
22
2.3
22
96
3
91
44
0
4
51
1.20
16423--16460
18
2.1
18
100
0
76
13
5
34
47
1.65
16516--16554
18
2.3
18
82
8
55
12
10
23
53
1.69
17460--17497
11
3.5
11
89
10
51
39
0
2
57
1.12
18949--19000
26
2.0
26
96
0
95
40
7
17
34
1.78
19382--19475
45
2.2
43
90
7
147
38
22
5
34
1.77
22235--22259
13
1.9
13
100
0
50
24
0
0
76
0.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28619--28663
20
2.2
20
84
4
54
66
8
6
17
1.40
33369--33445
39
2.0
39
94
0
136
51
23
18
6
1.68

Tables:   1

The End!