Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012266.1 Corchorus olitorius cultivar O-4 contig12299, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7832
ACGTcount: A:0.31, C:0.23, G:0.24, T:0.22


Found at i:109 original size:29 final size:28

Alignment explanation


    Indices: 74--131  Score: 98
    Period size: 29  Copynumber: 2.0  Consensus size: 28

         64 TGGTTATTCC

                    *                    
         74 ATGTTCTTTAGCGTTCTTGAAGATTAGAA
          1 ATGTTCTTGAGCGTTCTTGAA-ATTAGAA

                                        
        103 ATGTTCTTGAGCGTTCTTGAAATTAGAA
          1 ATGTTCTTGAGCGTTCTTGAAATTAGAA

             
        131 A
          1 A

        132 GTTTGAAAAA


Statistics
Matches: 28,  Mismatches: 1, Indels: 1
        0.93            0.03        0.03

Matches are distributed among these distances:
  28    8  0.29
  29   20  0.71

ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40


Consensus pattern (28 bp):   
ATGTTCTTGAGCGTTCTTGAAATTAGAA
Done.