Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012268.1 Corchorus olitorius cultivar O-4 contig12301, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31844

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
587--656
36
1.9
36
97
0
131
61
7
8
22
1.49
2930--3114
98
1.9
98
94
2
327
24
16
11
47
1.79
8883--8961
31
2.5
31
82
8
106
37
20
10
31
1.86
9461--9486
2
13.0
2
100
0
52
0
50
0
50
1.00
10926--10964
18
2.2
18
80
0
51
53
15
20
10
1.70
18921--18951
10
3.1
10
100
0
62
38
0
29
32
1.57
20110--20294
93
2.0
93
92
0
307
31
14
2
51
1.56
20352--20407
29
2.0
29
82
3
69
41
8
5
44
1.58
20840--20912
31
2.4
31
100
0
146
20
21
23
34
1.97
20865--20914
15
3.3
15
70
25
50
20
20
26
34
1.96
28918--29014
21
4.5
21
79
7
79
45
9
16
28
1.78
29050--29110
22
2.8
22
85
5
79
44
11
8
36
1.71

Tables:   1

The End!