Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012270.1 Corchorus olitorius cultivar O-4 contig12303, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36718

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1605--1673
36
1.9
36
96
0
129
60
7
8
23
1.51
9849--9927
38
2.1
39
95
2
142
58
6
0
35
1.24
10562--10610
6
8.5
6
82
13
59
0
0
16
83
0.64
10563--10601
7
5.4
7
82
17
53
0
0
12
87
0.55
10563--10610
8
6.0
8
86
13
64
0
0
14
85
0.60
10562--10601
15
2.8
14
88
3
62
0
0
15
85
0.61
10564--10615
11
4.6
11
81
11
61
1
0
15
82
0.75
10983--11063
27
3.0
27
90
0
135
16
17
24
41
1.89
12133--12166
16
2.1
16
88
0
50
70
0
23
5
1.09
19959--20020
30
2.1
30
96
0
115
45
4
24
25
1.73
22507--22569
31
2.0
31
96
0
117
19
11
15
53
1.71
22700--22821
49
2.6
48
88
6
180
36
21
7
35
1.81
30176--30270
30
3.2
30
74
14
97
28
21
22
28
1.99
32052--32084
17
1.9
17
93
0
57
36
18
15
30
1.91
34607--34945
43
8.0
43
76
7
327
37
26
10
25
1.88
34608--34938
84
3.9
84
88
4
479
38
26
10
24
1.88
34986--35017
2
16.0
2
93
0
55
46
0
3
50
1.17
35394--35465
29
2.5
29
93
0
117
15
15
26
43
1.86

Tables:   1

The End!