Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012272.1 Corchorus olitorius cultivar O-4 contig12305, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108156

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4508--4548
21
2.0
21
90
0
64
34
24
7
34
1.83
7117--7164
11
4.8
10
80
17
55
45
4
20
29
1.70
7127--7167
19
2.2
19
91
4
66
46
4
19
29
1.71
10454--10615
82
2.0
81
86
1
225
31
23
18
26
1.97
10718--10771
22
2.5
21
82
11
65
38
27
5
27
1.79
16231--16273
20
2.1
20
87
12
61
62
9
18
9
1.51
20075--20101
1
27.0
1
100
0
54
100
0
0
0
0.00
27451--27481
16
2.0
15
93
6
53
38
19
22
19
1.93
33526--33550
12
2.1
12
100
0
50
16
16
0
68
1.22
35098--35250
76
2.0
76
94
0
270
45
9
16
28
1.79
48876--48913
2
19.0
2
100
0
76
50
0
0
50
1.00
48904--48991
43
2.0
44
97
2
169
26
11
13
48
1.76
49590--49913
163
2.0
163
96
0
603
35
11
13
39
1.80
52066--52202
31
4.5
31
82
3
125
38
13
15
32
1.86
52331--52396
31
2.2
29
89
5
96
22
18
10
48
1.78
54724--54863
73
1.9
75
94
5
248
31
6
23
38
1.80
57157--57227
30
2.4
30
88
9
103
45
14
11
29
1.79
57308--57356
23
2.1
23
100
0
98
30
20
22
26
1.98
60685--60742
2
29.0
2
96
0
107
51
0
48
0
1.00
67131--67191
30
2.0
30
96
0
113
9
27
16
45
1.79
69909--69951
20
2.2
20
83
8
52
53
20
6
18
1.67
74629--74661
17
1.9
17
100
0
66
30
18
24
27
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
80045--80074
15
2.1
14
93
6
51
33
0
0
66
0.92
80701--80725
11
2.3
11
100
0
50
20
8
16
56
1.65
86246--86289
16
2.6
17
89
7
63
63
0
0
36
0.95
87588--87622
16
2.1
16
89
5
52
31
0
2
65
1.07
88804--88845
15
2.7
15
92
3
66
11
9
14
64
1.50
90955--90999
23
2.0
23
86
8
65
22
24
6
46
1.75
96184--96236
26
2.0
25
82
13
63
26
9
11
52
1.67
100062--100108
11
4.7
10
80
17
53
40
6
21
31
1.78
100073--100108
19
1.9
18
88
5
54
41
2
22
33
1.68
101638--101673
6
5.8
6
96
3
63
2
13
0
83
0.76
105172--105224
18
2.8
18
77
8
61
73
0
1
24
0.93

Tables:   1

The End!