Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012275.1 Corchorus olitorius cultivar O-4 contig12308, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37925

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1528--1616
44
2.0
44
95
0
160
29
11
17
41
1.84
18558--18674
39
3.0
39
100
0
234
30
15
33
20
1.94
19045--19118
38
1.9
38
86
5
105
45
2
17
33
1.63
22595--22647
22
2.5
21
78
6
61
69
11
9
9
1.36
25561--25616
29
1.9
30
85
7
80
35
8
25
30
1.86
26590--26619
2
15.0
2
100
0
60
50
0
0
50
1.00
31839--31890
23
2.3
23
86
0
77
21
36
11
30
1.89
32297--32328
2
16.0
2
100
0
64
50
0
0
50
1.00
32526--32636
56
2.0
56
90
0
177
34
22
2
40
1.68
32701--32783
42
2.0
42
92
0
139
30
8
16
44
1.78
35840--36131
151
1.9
151
95
0
521
26
18
12
42
1.86

Tables:   1

The End!