Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012278.1 Corchorus olitorius cultivar O-4 contig12311, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83274

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
524--584
32
1.9
32
89
0
95
47
6
18
27
1.73
3502--3603
51
2.0
50
83
9
127
21
23
13
41
1.89
6586--6641
29
1.9
29
92
0
94
28
14
1
55
1.49
8718--8858
49
2.9
48
85
7
180
26
14
7
51
1.67
9189--9246
28
2.1
28
100
0
116
34
6
24
34
1.82
10848--10920
30
2.4
31
83
2
85
31
15
20
32
1.93
12464--12698
117
2.0
117
98
0
452
40
14
20
25
1.89
18666--18699
15
2.2
16
89
5
52
17
11
11
58
1.62
37264--37297
12
2.8
12
100
0
68
0
47
0
52
1.00
39652--39694
20
2.2
20
91
4
70
55
0
0
44
0.99
40426--40493
30
2.2
31
82
12
79
51
2
11
33
1.54
40615--40667
19
2.8
18
80
8
70
50
0
0
49
1.00
40616--40670
17
3.1
17
81
5
65
49
0
0
50
1.00
40778--40856
30
2.6
30
77
2
86
29
24
18
27
1.98
41765--41797
15
2.1
16
88
5
50
48
33
6
12
1.65
42867--42937
3
24.0
3
97
2
135
67
0
0
32
0.91
44469--44607
67
2.0
67
87
6
197
27
13
14
44
1.83
44469--44607
68
2.0
68
87
6
199
27
13
14
44
1.83
45627--45731
54
2.0
54
94
5
189
27
15
19
38
1.91
51754--51815
31
2.0
31
100
0
124
29
12
9
48
1.73
61687--61920
120
2.0
118
87
7
343
48
2
11
36
1.54
62592--62653
25
2.6
24
87
5
81
58
4
8
29
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70069--70096
14
2.0
14
100
0
56
42
0
28
28
1.56
72393--72534
2
71.0
2
81
0
122
12
50
0
37
1.41
73936--73976
21
2.0
21
100
0
82
43
4
19
31
1.72
76629--76672
22
2.0
22
95
0
79
31
2
27
38
1.69

Tables:   1

The End!