Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012280.1 Corchorus olitorius cultivar O-4 contig12313, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 18285
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.29


Found at i:17773 original size:4 final size:4

Alignment explanation


    Indices: 17764--17788  Score: 50
    Period size: 4  Copynumber: 6.2  Consensus size: 4

      17754 TAACTTATGC

                                           
      17764 ATAA ATAA ATAA ATAA ATAA ATAA A
          1 ATAA ATAA ATAA ATAA ATAA ATAA A

      17789 CAAACTACAC


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   21  1.00

ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24


Consensus pattern (4 bp):   
ATAA

Done.