Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012284.1 Corchorus olitorius cultivar O-4 contig12317, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55362

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1211--1235
2
12.5
2
100
0
50
48
0
0
52
1.00
16331--16388
21
2.8
21
83
0
80
41
13
8
36
1.76
17392--17442
16
2.8
19
82
17
81
15
21
13
49
1.79
25833--26263
27
16.0
27
82
6
273
22
38
15
23
1.93
25856--26258
54
7.5
54
86
1
522
22
38
15
22
1.92
25856--26258
81
5.0
80
85
2
529
22
38
15
22
1.92
26342--26511
27
6.3
27
92
0
259
22
25
23
27
2.00
33358--33392
6
5.8
6
100
0
70
51
0
17
31
1.45
39825--40523
245
2.9
245
90
2
1057
25
14
20
39
1.90
55272--55298
3
9.0
3
100
0
54
66
0
0
33
0.92

Tables:   1

The End!