Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012288.1 Corchorus olitorius cultivar O-4 contig12321, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10350
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33


Found at i:8633 original size:7 final size:7

Alignment explanation


    Indices: 8617--8649  Score: 59
    Period size: 7  Copynumber: 4.9  Consensus size: 7

       8607 TGCTAGACAA

                   
       8617 TGCA-TT
          1 TGCATTT

                   
       8623 TGCATTT
          1 TGCATTT

                   
       8630 TGCATTT
          1 TGCATTT

                   
       8637 TGCATTT
          1 TGCATTT

                  
       8644 TGCATT
          1 TGCATT

       8650 GCCGTGAAGG


Statistics
Matches: 26,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   6    4  0.15
   7   22  0.85

ACGTcount: A:0.15, C:0.15, G:0.15, T:0.55


Consensus pattern (7 bp):   
TGCATTT

Done.