Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012290.1 Corchorus olitorius cultivar O-4 contig12323, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62038

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7038--7079
15
2.7
15
92
3
66
11
9
14
64
1.50
10659--10727
32
2.1
32
81
7
77
18
47
26
7
1.74
11428--11461
15
2.3
15
89
0
50
23
0
23
52
1.47
14737--14904
22
7.8
22
69
17
77
37
17
8
36
1.80
14809--14904
44
2.2
44
81
3
104
36
15
10
37
1.82
15161--15315
22
7.0
22
78
5
105
38
16
8
36
1.79
15153--15319
68
2.5
66
87
3
219
38
15
9
36
1.80
15216--15319
22
4.7
22
78
13
115
35
15
11
37
1.84
18652--18953
150
2.0
150
98
0
586
42
15
10
31
1.81
29892--29947
22
2.6
21
80
5
67
28
26
32
12
1.93
30061--30892
439
1.9
441
84
4
1133
41
16
14
27
1.87
31079--31111
2
16.5
2
100
0
66
48
0
0
51
1.00
33221--33254
14
2.4
14
100
0
68
20
0
44
35
1.52
34590--34633
23
1.9
23
81
9
54
61
6
2
29
1.34
36721--36845
62
2.0
61
95
1
223
35
12
16
36
1.86
37865--38012
73
2.0
73
97
0
278
22
18
19
39
1.93
37982--38106
62
2.0
62
100
0
250
20
17
24
37
1.94
38127--38242
57
2.0
58
98
1
225
28
20
20
30
1.98
38272--38315
23
1.9
23
95
0
79
43
18
25
13
1.86
41231--41268
17
2.2
17
86
9
51
52
2
5
39
1.38
44189--44335
22
6.8
22
73
10
124
41
13
7
37
1.73
44189--44335
44
3.4
44
74
10
142
41
13
7
37
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49311--49361
22
2.3
22
83
6
59
43
9
7
39
1.67
57370--57411
15
2.7
15
85
3
57
66
9
9
14
1.44
58164--58189
11
2.4
11
100
0
52
69
7
15
7
1.35
61006--61044
21
1.9
21
89
5
62
7
25
51
15
1.70

Tables:   1

The End!