Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012293.1 Corchorus olitorius cultivar O-4 contig12326, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49959

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3842--4113
41
6.5
41
84
5
292
29
14
19
37
1.91
4595--4636
21
2.0
21
95
0
75
11
52
21
14
1.73
5110--5200
27
3.4
27
89
0
128
15
23
28
32
1.95
8858--9506
35
18.4
36
78
8
606
19
19
20
41
1.91
8906--9506
281
2.1
280
90
1
945
18
19
19
41
1.91
9667--10071
30
13.4
30
83
6
444
19
15
19
45
1.86
9667--10071
60
6.7
60
87
2
492
19
15
19
45
1.86
9679--10066
152
2.6
150
85
4
512
19
15
19
45
1.86
13863--13985
44
2.8
45
88
3
169
33
13
7
45
1.72
19207--19232
13
2.0
13
100
0
52
61
23
0
15
1.33
21113--21174
32
2.0
31
93
3
106
9
24
46
19
1.79
33994--34057
32
2.0
32
93
0
110
43
12
12
31
1.80
34910--34948
21
1.9
20
89
5
60
30
15
15
38
1.88
36212--36261
6
8.3
6
100
0
100
0
0
16
84
0.63
36416--36458
22
2.0
21
86
4
59
39
23
13
23
1.90
44336--44370
5
7.0
5
96
0
52
65
34
0
0
0.93
45306--45413
53
2.0
54
85
8
150
37
15
26
20
1.93
46626--46654
1
29.0
1
100
0
58
100
0
0
0
0.00
47622--47661
15
2.8
14
81
7
53
60
0
37
2
1.11
49412--49441
13
2.3
13
94
0
51
3
40
3
53
1.34
49913--49948
2
18.0
2
100
0
72
50
0
0
50
1.00

Tables:   1

The End!