Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012297.1 Corchorus olitorius cultivar O-4 contig12330, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50020

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
311--357
25
1.9
25
95
4
87
55
8
6
29
1.55
348--428
39
2.0
40
90
2
128
38
3
7
50
1.48
644--693
2
24.0
2
84
8
64
46
2
6
46
1.39
11534--11563
16
1.9
16
93
6
53
16
13
20
50
1.78
16223--16272
15
3.1
15
73
15
55
30
18
24
28
1.97
17662--17713
18
2.6
19
82
14
61
53
1
13
30
1.50
24712--24769
26
2.2
26
87
0
80
12
39
36
12
1.80
25296--25364
28
2.5
28
97
0
129
44
2
24
27
1.68
30879--30908
6
5.0
6
91
0
51
63
0
36
0
0.95
44844--44875
4
8.0
4
92
0
55
53
21
25
0
1.46
49667--49736
36
1.9
36
88
0
104
21
11
8
58
1.59

Tables:   1

The End!