Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012298.1 Corchorus olitorius cultivar O-4 contig12331, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36371

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--396
204
2.0
201
95
2
722
44
8
10
36
1.69
466--511
24
1.9
24
86
8
67
52
10
6
30
1.62
502--576
39
1.9
38
91
2
123
40
1
8
50
1.40
723--916
96
2.0
96
98
0
379
41
5
13
39
1.67
902--964
6
10.5
6
100
0
126
50
0
15
33
1.45
1678--1717
17
2.3
18
87
8
57
17
67
12
2
1.33
4900--5093
42
4.3
42
79
16
210
41
15
7
36
1.75
4879--5071
95
2.0
95
96
0
359
39
14
7
37
1.75
6321--6401
40
2.0
41
90
4
128
35
8
12
43
1.73
17046--17075
14
2.1
14
100
0
60
33
6
23
36
1.81
17704--17812
37
3.2
37
60
24
92
44
21
6
28
1.76
17656--17838
66
2.8
66
94
0
303
44
20
8
26
1.80
34235--34270
5
6.8
5
90
9
54
0
2
16
80
0.83
34234--34274
6
7.3
6
83
10
52
0
2
17
80
0.82
34235--34270
11
3.4
11
88
3
56
0
2
16
80
0.83
34825--34852
14
2.0
14
100
0
56
42
7
14
35
1.73
34872--34896
13
1.9
13
100
0
50
32
8
16
44
1.76
36330--36368
2
20.0
2
89
5
62
48
0
2
48
1.15

Tables:   1

The End!