Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000123.1 Corchorus olitorius cultivar O-4 contig00123, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 608

Length: 1014
ACGTcount: A:0.28, C:0.24, G:0.13, T:0.36


Found at i:524 original size:3 final size:3

Alignment explanation


    Indices: 518--542  Score: 50
    Period size: 3  Copynumber: 8.3  Consensus size: 3

        508 CTTTTTTTTT

                                             
        518 TTC TTC TTC TTC TTC TTC TTC TTC T
          1 TTC TTC TTC TTC TTC TTC TTC TTC T

        543 CCCTCTCCTT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   22  1.00

ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68


Consensus pattern (3 bp):   
TTC

Done.