Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012300.1 Corchorus olitorius cultivar O-4 contig12333, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13471
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35


Found at i:10798 original size:61 final size:61

Alignment explanation


    Indices: 10703--10819  Score: 234
    Period size: 61  Copynumber: 1.9  Consensus size: 61

      10693 TTTGAAAATT

                                                                         
      10703 TGTTTGTTTATTCATGGCAAGGGCATATGGAATCAGGTATGCACTTTTGTGTGTGTGTGTG
          1 TGTTTGTTTATTCATGGCAAGGGCATATGGAATCAGGTATGCACTTTTGTGTGTGTGTGTG

                                                                    
      10764 TGTTTGTTTATTCATGGCAAGGGCATATGGAATCAGGTATGCACTTTTGTGTGTGT
          1 TGTTTGTTTATTCATGGCAAGGGCATATGGAATCAGGTATGCACTTTTGTGTGTGT

      10820 CTATTGCATC


Statistics
Matches: 56,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  61   56  1.00

ACGTcount: A:0.19, C:0.10, G:0.30, T:0.41


Consensus pattern (61 bp):   
TGTTTGTTTATTCATGGCAAGGGCATATGGAATCAGGTATGCACTTTTGTGTGTGTGTGTG

Found at i:12484 original size:13 final size:13

Alignment explanation


    Indices: 12466--12495  Score: 51
    Period size: 13  Copynumber: 2.3  Consensus size: 13

      12456 ATCCAAACAC

                         
      12466 ATCCCTCTTGAAA
          1 ATCCCTCTTGAAA

                        *
      12479 ATCCCTCTTGAAT
          1 ATCCCTCTTGAAA

                
      12492 ATCC
          1 ATCC

      12496 TCATCCCTCT


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  13   16  1.00

ACGTcount: A:0.27, C:0.33, G:0.07, T:0.33


Consensus pattern (13 bp):   
ATCCCTCTTGAAA
Done.