genome.fa.s12301.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012301.1 Corchorus olitorius cultivar O-4 contig12334, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68735

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
887--943	24	2.4	24	100	0	114	12	36	40	10	1.77
18222--18263	20	2.0	21	86	4	59	23	21	16	38	1.93
20769--20989	108	2.0	109	89	0	336	32	21	18	28	1.97
22096--22137	20	2.0	21	86	4	59	23	21	16	38	1.93
25073--25129	30	1.9	30	85	7	80	10	21	10	57	1.61
26112--26150	17	2.1	20	86	13	57	33	5	28	33	1.79
43334--43396	30	2.1	30	88	5	92	39	15	12	31	1.85
44850--44959	45	2.4	45	80	4	123	19	30	5	44	1.73
47511--47550	20	2.0	21	85	5	55	15	12	7	65	1.47
48652--48679	2	14.0	2	100	0	56	50	0	0	50	1.00
51530--51651	49	2.5	48	84	3	147	51	5	18	23	1.68
55103--55127	2	12.5	2	100	0	50	48	0	0	52	1.00
55504--55627	44	2.8	44	88	0	176	41	13	12	33	1.82
55504--55694	22	8.7	22	78	1	150	42	12	12	32	1.79
55720--55796	22	3.5	22	85	5	84	37	6	22	33	1.80
55965--56017	22	2.4	22	83	0	70	35	11	13	39	1.80
56001--56060	22	2.7	22	82	10	77	31	10	20	38	1.85
55983--56072	22	4.1	22	77	5	65	33	10	18	37	1.85
64932--64965	18	1.9	18	88	5	52	64	0	0	35	0.94
65267--65387	44	2.9	42	89	7	178	23	40	13	23	1.89
65657--65920	123	2.1	122	84	5	336	31	27	28	12	1.93
65872--65978	56	1.9	56	94	3	189	39	24	23	13	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66060--66108	21	2.4	20	80	10	55	36	18	34	10	1.85
66116--66206	25	3.6	25	96	0	164	24	32	38	4	1.75
66341--66388	25	1.9	25	91	0	78	27	33	31	8	1.86
66942--66988	18	2.6	18	100	0	94	31	29	10	27	1.90
67178--67338	62	2.6	62	88	0	223	33	19	31	14	1.93
67480--67574	25	3.7	24	76	13	73	26	31	34	7	1.84
67509--67565	29	2.0	29	92	0	96	26	29	36	7	1.83
67343--67690	164	2.2	160	86	3	482	28	27	32	10	1.91
67636--67695	25	2.4	25	91	0	93	33	28	30	8	1.86
67704--67783	29	2.8	29	90	0	115	28	30	32	8	1.87
67947--68027	36	2.2	36	86	0	108	39	18	24	17	1.92
67983--68100	58	2.0	58	81	0	137	35	22	27	15	1.94

Tables:   1

The End!