Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012306.1 Corchorus olitorius cultivar O-4 contig12339, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17202

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7949--8157
39
5.4
38
74
12
131
23
18
19
38
1.93
7949--8159
78
2.7
77
79
2
215
23
18
19
38
1.93
8018--8504
39
12.6
38
75
6
372
24
18
19
37
1.94
8092--8504
116
3.6
113
76
6
355
24
18
19
37
1.94
8018--8504
77
6.3
78
76
9
338
24
18
19
37
1.94
8051--8443
155
2.5
154
79
7
377
24
18
18
38
1.93
8255--8481
38
5.9
38
75
6
143
25
18
20
36
1.95
10294--10371
38
2.1
38
95
0
138
20
24
20
34
1.96
12863--12941
1
79.0
1
70
0
50
84
8
5
1
0.81
12871--12936
8
8.5
8
75
8
57
84
10
4
0
0.75
12863--12941
23
3.5
23
81
10
101
84
8
5
1
0.81
13405--13437
9
3.3
10
87
12
50
87
12
0
0
0.53
13409--13438
15
2.1
14
93
6
51
90
10
0
0
0.47
14649--14820
69
2.5
69
89
3
265
23
30
18
27
1.97
14836--15312
35
13.8
35
79
10
486
30
20
21
27
1.98
14838--15174
70
4.9
70
95
0
538
30
20
20
27
1.98
15148--15357
69
3.1
69
92
0
359
30
20
23
25
1.98
15706--15803
26
3.7
26
88
1
133
17
13
26
42
1.86

Tables:   1

The End!