Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012308.1 Corchorus olitorius cultivar O-4 contig12341, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5579
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.29


Found at i:4159 original size:15 final size:15

Alignment explanation


    Indices: 4139--4173  Score: 61
    Period size: 15  Copynumber: 2.3  Consensus size: 15

       4129 CCTTTGCAAC

                   *       
       4139 CTAAAATTCTGAATA
          1 CTAAAATGCTGAATA

                           
       4154 CTAAAATGCTGAATA
          1 CTAAAATGCTGAATA

                 
       4169 CTAAA
          1 CTAAA

       4174 TAAATGAAAA


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  15   19  1.00

ACGTcount: A:0.49, C:0.14, G:0.09, T:0.29


Consensus pattern (15 bp):   
CTAAAATGCTGAATA
Done.