Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012310.1 Corchorus olitorius cultivar O-4 contig12343, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67589

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3069--3140
31
2.3
31
75
17
78
59
8
5
26
1.48
3376--3410
2
18.5
2
88
11
56
48
0
0
51
1.00
3626--3662
16
2.3
16
90
0
56
8
16
40
35
1.78
4959--5061
39
2.7
39
86
1
136
30
22
14
33
1.94
6975--7019
17
2.7
17
93
3
74
48
8
0
42
1.34
16394--16444
20
2.5
20
87
3
75
19
31
15
33
1.93
23303--23349
24
2.0
24
86
0
67
12
6
6
74
1.20
24271--24299
15
1.9
15
100
0
58
89
10
0
0
0.48
27122--27203
29
2.8
30
83
12
107
40
17
8
34
1.80
29813--29862
18
2.7
19
75
6
57
42
30
8
20
1.80
30792--30830
17
2.2
18
95
4
71
53
5
10
30
1.56
30784--30875
46
2.0
46
85
6
123
54
2
10
32
1.47
30792--30843
18
2.9
18
88
2
61
53
3
9
32
1.51
31445--31507
20
3.1
20
93
2
99
53
7
12
25
1.65
31445--31522
20
3.8
20
89
1
93
51
7
11
29
1.66
33598--33731
72
1.9
72
96
0
250
29
20
14
35
1.92
39180--39241
33
1.9
32
86
3
88
33
19
6
40
1.77
41924--41955
15
2.1
15
100
0
64
21
43
6
28
1.77
44886--44911
12
2.2
12
100
0
52
11
7
42
38
1.70
47204--47237
15
2.3
15
90
10
52
50
0
2
47
1.16
48140--48481
169
2.0
169
100
0
684
31
16
10
40
1.83
50045--50099
27
1.9
30
85
10
80
14
14
10
60
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52169--52222
27
2.1
26
86
10
76
16
24
9
50
1.74
52605--52629
10
2.5
10
100
0
50
32
8
0
60
1.26
53548--53614
35
1.9
35
96
0
125
46
13
20
19
1.83
62320--62347
2
14.0
2
100
0
56
0
0
50
50
1.00
66555--66585
2
15.5
2
100
0
62
51
0
0
48
1.00

Tables:   1

The End!