genome.fa.s12313.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012313.1 Corchorus olitorius cultivar O-4 contig12346, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99555

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6509--6687	33	5.5	33	87	1	243	13	36	44	4	1.65
6506--6687	65	2.8	65	88	1	247	13	36	45	4	1.64
6509--6687	98	1.8	98	85	0	250	13	36	44	4	1.65
9316--9598	147	1.9	145	85	7	394	31	22	10	34	1.89
10007--10054	2	23.5	2	87	4	69	45	4	2	47	1.33
11153--11184	15	2.1	15	94	0	55	31	0	28	40	1.57
12744--12775	15	2.1	15	100	0	64	28	0	31	40	1.57
13881--13935	22	2.5	22	79	2	67	50	10	14	23	1.74
13903--13972	21	3.3	22	75	15	56	44	11	15	28	1.81
13890--14000	22	5.1	22	76	10	95	42	9	18	29	1.82
14016--14051	2	18.0	2	100	0	72	50	0	0	50	1.00
16819--17168	181	1.9	179	92	1	583	51	2	10	35	1.49
17612--17678	30	2.2	32	81	10	86	25	16	13	44	1.84
17811--17883	31	2.5	31	84	6	89	45	12	17	24	1.83
21999--22044	24	2.0	23	86	4	65	23	17	34	23	1.96
25840--25877	11	3.5	11	89	10	51	39	0	2	57	1.12
26140--26183	23	1.9	23	81	9	54	29	9	0	61	1.27
29088--29118	13	2.4	13	94	0	53	35	29	9	25	1.88
29313--29365	26	2.0	26	92	0	88	30	28	20	20	1.98
30400--30460	31	2.0	31	83	6	79	24	14	3	57	1.53
31349--31682	46	7.4	46	81	9	386	34	16	21	28	1.95
31550--31673	47	2.7	47	84	3	162	33	16	22	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31413--31672	130	2.0	129	93	0	439	33	16	21	28	1.95
31889--31958	36	1.9	36	85	5	97	27	21	21	30	1.98
32150--32216	31	2.1	32	91	2	109	34	20	19	25	1.96
32300--32386	32	2.7	32	89	3	131	33	13	27	25	1.94
32543--32696	44	3.4	44	83	6	184	30	17	22	29	1.97
32524--32704	44	3.9	49	75	13	161	29	17	24	28	1.97
33032--33102	14	5.1	14	87	0	106	33	26	16	22	1.96
33023--33102	28	2.9	28	92	0	124	35	25	16	23	1.95
33165--33318	39	3.9	39	89	0	209	27	30	18	23	1.97
33272--33437	53	3.2	53	88	1	244	31	30	15	22	1.95
33846--34110	117	2.3	115	92	2	424	32	21	21	24	1.98
34318--34399	41	2.0	41	92	0	137	17	13	29	40	1.87
36556--36664	31	3.5	31	84	0	137	31	22	13	32	1.93
37253--37752	45	11.0	45	94	1	793	29	27	9	33	1.89
46401--46541	31	4.5	31	94	0	237	32	27	12	26	1.93
56896--56984	40	2.2	40	80	4	99	24	22	12	40	1.88
56973--57350	64	5.9	64	87	2	458	25	23	15	35	1.94
57297--57405	55	2.0	55	94	0	191	29	20	12	37	1.90
62107--62808	41	16.9	40	73	15	443	36	22	26	14	1.92
62322--62803	41	11.8	41	78	9	470	36	23	26	13	1.92
62364--62799	82	5.3	81	87	4	576	37	23	26	12	1.91
62106--62806	163	4.2	163	78	11	649	36	22	26	13	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64385--64442	28	2.1	28	93	0	98	22	39	17	20	1.92
69033--69083	15	3.5	15	86	7	61	37	11	7	43	1.71
71981--72082	38	2.7	38	98	0	195	27	16	5	50	1.68
72743--72770	13	2.2	13	100	0	56	25	14	7	53	1.66
72984--73019	14	2.6	14	95	0	63	33	11	16	38	1.84
76010--76061	20	2.5	20	78	3	59	9	7	25	57	1.57
76871--76970	37	2.9	35	85	11	134	32	18	17	33	1.93
76872--76974	34	2.9	37	88	8	144	33	18	16	32	1.93
76992--77092	40	2.8	36	75	15	100	25	16	18	38	1.92
83170--83240	16	4.5	16	71	1	54	36	32	16	14	1.89
87307--87349	23	1.9	22	85	4	59	53	2	0	44	1.13
87305--87356	19	2.7	19	79	5	61	50	1	0	48	1.12
91237--91301	28	2.3	28	94	0	112	24	13	13	47	1.80
94000--94030	16	1.9	16	93	0	53	48	6	3	41	1.45
95689--95836	22	6.8	22	71	14	119	37	14	9	39	1.78
95689--95836	44	3.4	45	77	11	148	37	14	9	39	1.78
96719--96745	2	13.5	2	100	0	54	51	0	48	0	1.00
98227--98287	27	2.3	26	81	16	63	44	3	8	44	1.50
98339--98369	15	2.1	15	93	0	53	45	3	3	48	1.34

Tables:   1

The End!