Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012317.1 Corchorus olitorius cultivar O-4 contig12350, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42914

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3935--4191
91
2.8
91
82
2
266
31
25
16
26
1.96
4140--4262
64
1.9
64
83
1
149
30
24
20
24
1.98
7233--7736
67
7.6
67
91
0
753
40
16
19
23
1.91
11944--12002
16
3.7
15
80
6
64
11
15
37
35
1.84
11921--11969
25
2.0
25
91
0
80
10
16
36
36
1.82
12725--12776
19
2.6
19
82
11
52
32
17
9
40
1.82
12738--12776
21
1.9
19
85
10
51
30
20
10
38
1.86
21937--21967
5
6.0
5
96
3
53
58
0
0
41
0.98
24963--25047
43
2.0
43
97
2
163
42
2
3
51
1.31
27654--27733
24
3.6
24
76
20
102
62
13
10
13
1.54
27676--27744
18
3.5
18
75
21
75
62
13
13
11
1.55
27678--27744
19
3.3
19
70
22
64
64
11
11
11
1.51
27645--27744
42
2.4
42
98
1
191
60
14
12
14
1.60
30478--30526
14
3.6
13
82
15
55
36
0
0
63
0.95
30489--30530
5
8.6
5
85
15
61
35
0
0
64
0.94
31886--31982
45
2.2
45
88
1
142
39
19
6
35
1.77
33637--33674
13
2.9
13
92
0
67
34
0
0
65
0.93
40166--40195
15
2.0
15
100
0
60
40
13
13
33
1.83
40819--41079
106
2.5
105
88
3
366
41
10
8
39
1.69
41594--41636
17
2.5
17
81
7
52
20
30
4
44
1.72
41632--41672
20
2.0
20
100
0
82
9
19
9
60
1.55
42568--42609
11
3.9
11
82
14
52
47
28
16
7
1.73

Tables:   1

The End!