Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012318.1 Corchorus olitorius cultivar O-4 contig12351, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30986

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--39
2
19.5
2
100
0
78
48
0
0
51
1.00
2431--2569
69
2.0
69
87
2
199
48
13
12
25
1.78
2959--2998
18
2.3
17
87
8
62
27
27
0
45
1.54
4374--4403
5
6.0
5
92
0
51
56
0
43
0
0.99
6049--6090
15
2.7
15
96
3
75
11
7
14
66
1.43
6398--6448
19
2.5
21
81
9
61
62
7
7
21
1.48
6766--7216
106
4.3
107
84
5
552
42
15
7
35
1.75
6766--7216
210
2.2
204
83
4
591
42
15
7
35
1.75
8544--8605
2
31.0
2
78
18
67
46
1
4
46
1.33
12759--12796
18
2.2
17
86
13
51
31
0
18
50
1.47
12828--12861
18
1.9
17
88
5
50
29
2
8
58
1.43
12823--12861
19
2.1
20
86
13
57
28
5
7
58
1.47
16527--16569
16
2.8
16
89
3
61
53
0
39
6
1.28
18189--18269
25
3.5
25
72
19
93
24
11
0
64
1.26
18212--18249
19
2.1
18
90
5
58
26
10
0
63
1.27
18191--18326
44
3.0
44
88
4
191
24
11
0
63
1.31
18345--18413
8
8.8
8
71
7
52
21
13
2
62
1.44
18345--18400
24
2.3
24
87
6
78
23
16
3
57
1.55
20906--20961
28
2.0
28
100
0
112
46
17
14
21
1.84
28766--28830
30
2.2
30
91
0
103
49
7
26
16
1.73

Tables:   1

The End!