Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012321.1 Corchorus olitorius cultivar O-4 contig12354, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33769

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13--43
2
15.5
2
100
0
62
48
0
0
51
1.00
3366--3433
32
2.1
32
91
0
109
33
25
20
20
1.97
3401--3538
32
4.4
32
79
5
138
26
22
20
30
1.98
4654--4699
2
24.0
2
89
8
69
47
0
2
50
1.13
9169--9274
3
35.3
3
98
0
203
66
0
0
33
0.99
9422--9461
11
3.5
11
80
12
53
40
2
7
50
1.44
9421--9469
24
2.0
24
100
0
98
36
4
8
51
1.51
9627--9661
5
6.8
5
90
6
52
34
0
2
62
1.10
11582--11676
30
3.2
30
83
1
102
34
27
23
14
1.94
16992--17319
106
3.1
106
85
4
439
42
8
9
39
1.67
17003--17319
105
3.0
107
85
3
426
42
8
9
39
1.69
17552--17615
29
2.1
31
85
5
87
26
21
10
40
1.86
20028--20110
7
11.9
7
93
0
130
24
0
19
56
1.42
20254--20326
33
2.2
33
87
0
101
34
8
15
42
1.76
20454--20677
54
4.2
53
86
5
306
36
21
14
27
1.92
20700--20750
20
2.7
18
81
6
57
52
7
13
25
1.67
20776--21379
74
8.2
74
88
0
832
42
15
18
23
1.88
20784--21379
37
16.1
37
79
3
581
42
15
18
23
1.88
22123--22291
87
1.9
87
90
2
268
28
24
10
36
1.89
22430--22487
29
2.0
29
83
12
75
10
13
5
70
1.31
23107--23171
14
4.8
13
87
12
87
36
10
9
43
1.72
23492--23556
14
4.8
13
83
12
78
38
9
7
44
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23492--23556
28
2.4
27
85
10
87
38
9
7
44
1.65
29109--29222
32
3.5
32
92
2
174
25
15
26
32
1.96
29871--29931
27
2.3
27
100
0
122
18
22
40
18
1.91

Tables:   1

The End!