Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012326.1 Corchorus olitorius cultivar O-4 contig12359, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36889

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
841--877
20
1.9
18
89
10
56
32
21
8
37
1.83
829--888
30
2.0
31
86
3
86
33
18
10
38
1.84
856--889
12
2.9
12
91
4
52
38
17
11
32
1.86
6580--6626
11
4.7
10
80
17
53
40
6
21
31
1.78
6591--6626
19
1.9
18
88
5
54
41
2
22
33
1.68
14287--14314
14
2.0
14
100
0
56
35
14
14
35
1.86
19005--20132
578
2.0
577
91
0
1837
23
23
23
29
1.99
31150--31222
30
2.4
30
90
4
112
28
20
9
41
1.84
31298--31333
14
2.7
13
87
8
54
38
13
2
44
1.59

Tables:   1

The End!