Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012327.1 Corchorus olitorius cultivar O-4 contig12360, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47213

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
571--705
49
2.8
47
82
9
141
46
5
17
29
1.72
6649--7570
132
6.9
132
93
1
1531
28
23
21
27
1.99
7575--7844
64
4.2
64
88
1
398
30
23
16
29
1.96
8705--8747
21
2.1
21
86
4
61
27
18
16
37
1.92
12972--13309
178
1.9
178
86
6
479
35
16
13
33
1.89
17361--17460
30
3.3
30
97
0
182
30
17
8
45
1.77
18915--19226
104
3.0
104
90
2
495
38
27
12
22
1.89
22080--22109
12
2.5
12
94
0
51
16
30
10
43
1.81
23994--24031
19
2.0
19
100
0
76
21
21
21
36
1.95
24666--24893
118
1.9
117
93
2
395
32
17
11
38
1.85
36578--36607
12
2.4
13
94
5
53
66
10
6
16
1.41
37902--37978
29
2.6
29
97
2
145
25
23
10
40
1.86
40976--41048
37
1.9
38
88
2
112
13
30
41
15
1.85

Tables:   1

The End!