Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012329.1 Corchorus olitorius cultivar O-4 contig12362, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88349

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5188--5223
19
1.9
18
88
5
54
33
22
2
41
1.68
6943--6985
15
2.9
16
86
10
56
16
4
16
62
1.48
9145--9483
38
8.9
38
79
0
318
31
18
20
29
1.96
10293--10418
64
2.0
64
90
0
198
23
23
15
38
1.92
23110--23216
38
2.8
38
81
6
144
48
5
17
28
1.70
26456--26491
16
2.2
16
90
0
54
33
55
2
8
1.44
33179--33250
26
2.8
25
70
21
69
30
16
29
23
1.96
33161--33353
25
7.5
24
66
22
72
34
13
29
22
1.92
33068--33350
53
5.5
52
81
4
324
34
12
27
24
1.92
33263--33341
26
3.0
26
70
17
81
36
11
26
25
1.90
33970--34012
22
2.0
22
85
0
59
74
2
6
16
1.14
37372--37402
16
2.0
15
93
6
53
16
6
12
64
1.47
37935--38035
38
2.7
38
87
6
143
46
4
18
29
1.70
38693--38723
11
2.8
11
95
0
53
0
3
19
77
0.90
41696--41764
36
1.9
36
87
0
102
26
13
24
36
1.92
55649--55674
6
4.3
6
100
0
52
38
0
30
30
1.58
55661--55768
35
3.1
36
86
4
157
51
1
22
24
1.57
55744--55924
22
8.4
22
70
14
135
57
3
18
20
1.56
55623--55801
83
2.1
83
82
7
211
50
2
24
22
1.62
55742--55924
44
4.3
42
77
12
183
56
3
18
20
1.57
56365--56468
37
2.9
36
88
5
149
26
16
18
38
1.92
59130--59169
19
2.1
19
90
0
62
37
32
17
12
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60028--60069
12
3.2
13
80
10
50
57
9
0
33
1.31
60938--60980
19
2.3
19
88
8
61
0
23
0
76
0.78
60940--60983
18
2.4
19
78
17
56
0
22
0
77
0.77
60941--60979
14
2.9
13
85
7
60
0
23
0
76
0.78
61676--61704
2
15.0
2
92
7
51
51
0
0
48
1.00
61907--61952
11
4.6
10
79
17
51
32
19
2
45
1.62
65114--65154
7
5.6
7
83
11
55
70
0
2
26
0.99
65117--65151
16
2.2
16
90
5
54
77
0
2
20
0.90
66846--66886
21
2.0
21
95
0
73
31
7
21
39
1.81
73956--74032
29
2.8
28
84
7
95
20
16
24
37
1.93
74295--74370
26
2.9
26
86
0
98
39
14
13
32
1.85
75192--75268
17
4.5
17
95
0
136
28
45
0
25
1.54
83898--84006
46
2.4
46
93
3
184
25
21
11
42
1.85
86238--86310
27
2.7
27
82
4
103
19
17
26
36
1.94

Tables:   1

The End!