Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001233.1 Corchorus olitorius cultivar O-4 contig01233, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 654

Length: 1090
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38


Found at i:1062 original size:15 final size:15

Alignment explanation


    Indices: 1042--1082  Score: 57
    Period size: 15  Copynumber: 2.7  Consensus size: 15

       1032 TTATTTTGCT

                            
       1042 TTGTTTTCTAG-TTAA
          1 TTGTTTTCT-GTTTAA

                           
       1057 TTGTTTTCTGTTTAA
          1 TTGTTTTCTGTTTAA

               *       
       1072 TTGCTTTCTGT
          1 TTGTTTTCTGT

       1083 CAATCGCT


Statistics
Matches: 24,  Mismatches: 1, Indels: 2
        0.89            0.04        0.07

Matches are distributed among these distances:
  14    1  0.04
  15   23  0.96

ACGTcount: A:0.12, C:0.10, G:0.15, T:0.63


Consensus pattern (15 bp):   
TTGTTTTCTGTTTAA
Done.