Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012330.1 Corchorus olitorius cultivar O-4 contig12363, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28925

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2361--2403
20
2.2
20
86
0
59
13
23
18
44
1.86
8712--8759
22
2.2
22
84
0
60
37
18
10
33
1.85
11749--11791
21
2.0
21
82
13
52
27
9
20
41
1.83
13667--13716
24
2.1
24
88
0
73
42
10
0
48
1.37
13877--13940
18
3.6
18
79
8
67
42
3
3
51
1.33
13900--13955
15
3.7
15
80
4
51
41
1
5
51
1.35
16329--16368
21
2.1
19
86
13
55
20
27
15
37
1.92
17001--17064
32
1.9
33
84
6
85
68
1
14
15
1.28
17536--17757
110
2.0
110
99
0
435
36
9
16
37
1.81
18841--18920
22
3.7
22
80
6
110
51
0
5
43
1.23
18841--18921
33
2.5
31
75
13
83
51
0
4
43
1.23
18841--18924
11
7.8
11
72
5
73
52
0
4
42
1.22
19841--19922
31
2.6
31
96
0
146
29
15
3
51
1.61
23814--23850
15
2.5
14
91
8
56
5
59
0
35
1.20
25450--25538
29
3.0
29
77
7
90
16
22
22
38
1.93
27203--27416
107
2.0
107
97
0
401
24
14
21
39
1.91
28098--28175
26
3.0
26
100
0
156
42
7
15
34
1.75
28891--28924
2
17.0
2
100
0
68
50
0
0
50
1.00

Tables:   1

The End!