Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012331.1 Corchorus olitorius cultivar O-4 contig12364, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50377

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1456--1492
19
2.0
19
89
5
58
64
0
0
35
0.94
3866--3907
16
2.6
16
80
0
57
38
30
14
16
1.89
4106--4132
2
13.5
2
100
0
54
51
0
0
48
1.00
4686--4742
29
2.0
29
82
6
71
45
3
3
47
1.37
4863--4952
16
5.7
16
72
6
76
42
35
12
10
1.76
10865--10933
34
2.0
34
97
0
129
34
11
18
34
1.87
39456--39498
20
2.1
21
91
4
70
53
9
13
23
1.69
39546--39621
21
3.6
21
83
3
98
39
7
10
42
1.69
39502--39625
43
2.9
43
86
1
158
37
7
12
43
1.70
39458--39625
22
7.9
21
72
7
99
41
7
12
38
1.72
41182--41206
5
5.0
5
100
0
50
0
20
40
40
1.52
45251--45329
31
2.7
30
82
7
99
40
13
29
16
1.87
45251--45329
28
2.7
30
84
5
99
40
13
29
16
1.87
49590--49624
17
2.0
18
88
5
54
51
14
8
25
1.70
49747--49778
16
2.0
16
93
0
55
46
0
0
53
1.00
49721--49770
25
1.9
27
88
8
77
42
0
4
54
1.19
49742--49794
19
2.8
19
82
8
63
49
0
0
50
1.00
49820--49894
35
2.1
35
97
0
141
41
18
17
22
1.90

Tables:   1

The End!