Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01012336.1 Corchorus olitorius cultivar O-4 contig12369, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60006
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Found at i:4706 original size:26 final size:23
Alignment explanation
Indices: 4676--4722 Score: 67
Period size: 26 Copynumber: 1.9 Consensus size: 23
4666 CTTGAAAATT
4676 TGAAAAACTTTGATGGATGAGATGGA
1 TGAAAAAC-TTGAT-GAT-AGATGGA
4702 TGAAAAACTTGATGATAGATG
1 TGAAAAACTTGATGATAGATG
4723 AATAGAAGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 5 0.24
24 3 0.14
25 5 0.24
26 8 0.38
ACGTcount: A:0.40, C:0.04, G:0.28, T:0.28
Consensus pattern (23 bp):
TGAAAAACTTGATGATAGATGGA
Found at i:8698 original size:366 final size:364
Alignment explanation
Indices: 8028--8762 Score: 1274
Period size: 366 Copynumber: 2.0 Consensus size: 364
8018 GATATTGCTG
*
8028 TGTCCCACCGGGCGTGCCAAAAGAAGATGTTGCGCCAAAAATCTCTTGCTAGAGTTTTCGCGGAG
1 TGTCCCACCGGGCGTGCCAAAAGAAGATGTTGCGCCAAAAATCTCTTGCTAGAGCTTTCGCGGAG
*
8093 AAATCTTTATGACAGCGTAAGGGCGTGCCAGTCAATTTGCTGAATTGACAAAGAGGTTGTAAAAA
66 AAATCTTTATGACAGCATAAGGGCGTGCCAGTCAATTTGCTGAATTGACAAAGAGGTTGTAAAAA
8158 CTGGATCTGGTGCACGGAGCAGCAGATTAAAAGATCAGAACAATTATGGAACTAGATCAAAGTCA
131 CTGGATCTGGTGCACGGAGCAGCAGATTAAAAGATCAGAACAATTATGGAACTAGATCAAAGTCA
8223 CACCAAAGCATCTAAATCATTGGATCCACACGAACTACATCTCATAACTGGGCCTCTTCTCTTTT
196 CACCAAAGCATCTAAATCATTGGATCCACACGAACTACATCTCATAACTGGGCCTCTTCTCTTTT
8288 TGGATCAGATCTGGGAGATCTGCTTTGAATGCAATTGAAATTGAAAAGAAAATAACAAACTGATC
261 TGGATCAGATCTGGGAGATCTGCTTTGAATGCAATTGAAATTGAAAAGAAAATAACAAACTGATC
*
8353 TGTTATTTCTGAATGAAAAAGACGTGTACAGTGTTTGTA
326 TGTTATTTCTGAATGAAAAACACGTGTACAGTGTTTGTA
* *
8392 TGTCCCATCGGGCGTGCCAAAA-AGAGGTGTTGCGCCAAAAATCTCTTGCTAGAGCTTTCGCGGA
1 TGTCCCACCGGGCGTGCCAAAAGA-AGATGTTGCGCCAAAAATCTCTTGCTAGAGCTTTCGCGGA
* *
8456 TAAATCTTTATGACAGCATAAGGGTGTGCCAGTCAATTTGCTGAAATTGACAAAGAGGTTGTAAA
65 GAAATCTTTATGACAGCATAAGGGCGTGCCAGTCAATTTGCTG-AATTGACAAAGAGGTTGTAAA
* * * * *
8521 AACTGGATCTGGTGCGCGGAGCAGCAGATTAAAAGATCAGAACGATTGTGGGGACTGGATCAAAG
129 AACTGGATCTGGTGCACGGAGCAGCAGATTAAAAGATCAGAACAATTAT-GGAACTAGATCAAAG
** * *
8586 TCACACCGGAGCATCTAAATCATTGGATCCACACGAACTACTTCTCATAACTGGGCCTCTTCTTT
193 TCACACCAAAGCATCTAAATCATTGGATCCACACGAACTACATCTCATAACTGGGCCTCTTCTCT
* *
8651 TTTTGGATCATATCTGGGAGATCTGCTTTGATTGCAATTGAAATTGAAAAGAAAATAACAAACTG
258 TTTTGGATCAGATCTGGGAGATCTGCTTTGAATGCAATTGAAATTGAAAAGAAAATAACAAACTG
8716 ATCTGTTATTTCTGAATGAAAAACACGTGTACAGTGTTTGTA
323 ATCTGTTATTTCTGAATGAAAAACACGTGTACAGTGTTTGTA
8758 TGTCC
1 TGTCC
8763 GGAGACAAGA
Statistics
Matches: 350, Mismatches: 18, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
363 1 0.00
364 99 0.28
365 67 0.19
366 183 0.52
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (364 bp):
TGTCCCACCGGGCGTGCCAAAAGAAGATGTTGCGCCAAAAATCTCTTGCTAGAGCTTTCGCGGAG
AAATCTTTATGACAGCATAAGGGCGTGCCAGTCAATTTGCTGAATTGACAAAGAGGTTGTAAAAA
CTGGATCTGGTGCACGGAGCAGCAGATTAAAAGATCAGAACAATTATGGAACTAGATCAAAGTCA
CACCAAAGCATCTAAATCATTGGATCCACACGAACTACATCTCATAACTGGGCCTCTTCTCTTTT
TGGATCAGATCTGGGAGATCTGCTTTGAATGCAATTGAAATTGAAAAGAAAATAACAAACTGATC
TGTTATTTCTGAATGAAAAACACGTGTACAGTGTTTGTA
Found at i:10215 original size:14 final size:14
Alignment explanation
Indices: 10196--10235 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
10186 TAGGGTTTTT
10196 AATAATAATTATTC
1 AATAATAATTATTC
* *
10210 AATAATTATTATTT
1 AATAATAATTATTC
10224 AATTAATAATTA
1 AA-TAATAATTA
10236 ATTAATTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
14 14 0.64
15 8 0.36
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (14 bp):
AATAATAATTATTC
Found at i:14687 original size:16 final size:16
Alignment explanation
Indices: 14668--14701 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
14658 TTTTTTCCAA
14668 TTTCCTTATTTTCTTC
1 TTTCCTTATTTTCTTC
* *
14684 TTTCCTTCTTTTTTTC
1 TTTCCTTATTTTCTTC
14700 TT
1 TT
14702 CTCATCTTCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.03, C:0.24, G:0.00, T:0.74
Consensus pattern (16 bp):
TTTCCTTATTTTCTTC
Found at i:17437 original size:31 final size:31
Alignment explanation
Indices: 17402--17466 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
17392 AAACTTTGAA
*
17402 GAAATAATGCACCACATTAACTTGATCCATC
1 GAAATAATGCACCACATTAACTTGATCCACC
* * *
17433 GAAATACTGCACCGCGTTAACTTGATCCACC
1 GAAATAATGCACCACATTAACTTGATCCACC
17464 GAA
1 GAA
17467 TCAAATTGGT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.35, C:0.28, G:0.14, T:0.23
Consensus pattern (31 bp):
GAAATAATGCACCACATTAACTTGATCCACC
Found at i:17615 original size:90 final size:90
Alignment explanation
Indices: 17476--17973 Score: 654
Period size: 90 Copynumber: 5.5 Consensus size: 90
17466 ATCAAATTGG
* * * * *
17476 TTCACCGAATCATCCTAAAGTGATTGAAAAATGTGCTACACCGAGCTCACCGGATCCAACTTTGG
1 TTCACCGAATCATCCTGAACTGTTTG-AAAATGTGCTGCACCGAGCTCACCGAATCCAACTTTGG
*
17541 AGAAATCATGCACCGCATTAACTTGA
65 AGAAATAATGCACCGCATTAACTTGA
* * * * * *
17567 TTCACTGAATCGTCCTGAATTGTTTGAAAATGTGCTGCACCGAGCTCACTGAACCCAAATTTGGA
1 TTCACCGAATCATCCTGAACTGTTTGAAAATGTGCTGCACCGAGCTCACCGAATCCAACTTTGGA
* *
17632 GAAATAATGTATCGCATTAACTTGA
66 GAAATAATGCACCGCATTAACTTGA
* * ** *
17657 TTCACCGAATCGTCCTGAACTGTTTGAAAATTTAATGCACCGAGCTCACCGGATCCAACTTTGGA
1 TTCACCGAATCATCCTGAACTGTTTGAAAATGTGCTGCACCGAGCTCACCGAATCCAACTTTGGA
* *
17722 GAAACAATGCACCGCATTAACCTGA
66 GAAATAATGCACCGCATTAACTTGA
*
17747 TTCACCGAATCGTCCTGAACTGTTTGAAAATGTGCTGCACCGAGCTCACCGAATCCAACTTTGGA
1 TTCACCGAATCATCCTGAACTGTTTGAAAATGTGCTGCACCGAGCTCACCGAATCCAACTTTGGA
* *
17812 GAAATAATGCATCGTATTAACTTGA
66 GAAATAATGCACCGCATTAACTTGA
* *
17837 TTCATCGAATCATCCTGAACTGTTTGAAAATGTGCTGCACCGAGCTCACAGAATCCAACTTTGGA
1 TTCACCGAATCATCCTGAACTGTTTGAAAATGTGCTGCACCGAGCTCACCGAATCCAACTTTGGA
* * * * *
17902 GAAGTTATGCACCACATCAGCTTGA
66 GAAATAATGCACCGCATTAACTTGA
** * * * *
17927 TTCACCGAGCCATCCTAAACTATTTGAAGATGTGCTGCAACGAGCTC
1 TTCACCGAATCATCCTGAACTGTTTGAAAATGTGCTGCACCGAGCTC
17974 TCCTGAACTG
Statistics
Matches: 356, Mismatches: 51, Indels: 1
0.87 0.12 0.00
Matches are distributed among these distances:
90 335 0.94
91 21 0.06
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (90 bp):
TTCACCGAATCATCCTGAACTGTTTGAAAATGTGCTGCACCGAGCTCACCGAATCCAACTTTGGA
GAAATAATGCACCGCATTAACTTGA
Found at i:17988 original size:35 final size:35
Alignment explanation
Indices: 17939--18008 Score: 104
Period size: 35 Copynumber: 2.0 Consensus size: 35
17929 CACCGAGCCA
*
17939 TCCTAAACTATTTGAAGATGTGCTGCAACGAGCTC
1 TCCTAAACTATTTGAAGATATGCTGCAACGAGCTC
* * *
17974 TCCTGAACTGTTTGAAGATATGCTGCACCGAGCTC
1 TCCTAAACTATTTGAAGATATGCTGCAACGAGCTC
18009 ACCGAATCCA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (35 bp):
TCCTAAACTATTTGAAGATATGCTGCAACGAGCTC
Found at i:18191 original size:54 final size:53
Alignment explanation
Indices: 18104--18436 Score: 389
Period size: 54 Copynumber: 6.2 Consensus size: 53
18094 GATTTACCGA
** * * * *
18104 ATCACTTGAAGATAAACCCAAATCACTAAAAACTTCCTTGACTGACCGCACTGG
1 ATCACTTGAAGATAAACTTAAACCACT-GAAACTTTCTTGATTGACCGCACTGG
* * ** * *
18158 ATCACTTGAAGGTAAATTTAAACCACTGTAAACTTT-TTGAACGATCGCACTAG
1 ATCACTTGAAGATAAACTTAAACCACTG-AAACTTTCTTGATTGACCGCACTGG
* * * * *
18211 ATCACTTGAATATAACCTTAAACCACTGGAGACTTACATGATTGACCGCACTGG
1 ATCACTTGAAGATAAACTTAAACCACT-GAAACTTTCTTGATTGACCGCACTGG
* * *
18265 ATCACATGAAGATAAACTTAAACCACTAGAGACTTTTTTGATTGACCGCACTGG
1 ATCACTTGAAGATAAACTTAAACCACT-GAAACTTTCTTGATTGACCGCACTGG
* * *
18319 ATCACTTGAAGATAACCTTAAACCACTACAAACTTTCTTGATTGACCGCACTAG
1 ATCACTTGAAGATAAACTTAAACCACT-GAAACTTTCTTGATTGACCGCACTGG
*
18373 ATCACTTGAAGATAAACTTAAACCACTAGAGACTTTCTTGATTGACCGCACTGG
1 ATCACTTGAAGATAAACTTAAACCACT-GAAACTTTCTTGATTGACCGCACTGG
18427 ATCACTTGAA
1 ATCACTTGAA
18437 ACTCGGCAAA
Statistics
Matches: 237, Mismatches: 39, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
53 41 0.17
54 196 0.83
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (53 bp):
ATCACTTGAAGATAAACTTAAACCACTGAAACTTTCTTGATTGACCGCACTGG
Found at i:18344 original size:108 final size:108
Alignment explanation
Indices: 18104--18436 Score: 429
Period size: 108 Copynumber: 3.1 Consensus size: 108
18094 GATTTACCGA
* * * * * *
18104 ATCACTTGAAGATAAACC-CAAATCACTAAAAACTTCCTTGACTGACCGCACTGGATCACTTGAA
1 ATCACTTGAAGAT-AACCTTAAACCACTACAAACTTACATGATTGACCGCACTGGATCACTTGAA
* * * ** * *
18168 GGTAAATTTAAACCACT-GTAAAC-TTTTTGAACGATCGCACTAG
65 GATAAACTTAAACCACTAG-AGACTTTTTTGATTGACCGCACTGG
* ** * *
18211 ATCACTTGAATATAACCTTAAACCACTGGAGACTTACATGATTGACCGCACTGGATCACATGAAG
1 ATCACTTGAAGATAACCTTAAACCACTACAAACTTACATGATTGACCGCACTGGATCACTTGAAG
18276 ATAAACTTAAACCACTAGAGACTTTTTTGATTGACCGCACTGG
66 ATAAACTTAAACCACTAGAGACTTTTTTGATTGACCGCACTGG
* * *
18319 ATCACTTGAAGATAACCTTAAACCACTACAAACTTTCTTGATTGACCGCACTAGATCACTTGAAG
1 ATCACTTGAAGATAACCTTAAACCACTACAAACTTACATGATTGACCGCACTGGATCACTTGAAG
*
18384 ATAAACTTAAACCACTAGAGACTTTCTTGATTGACCGCACTGG
66 ATAAACTTAAACCACTAGAGACTTTTTTGATTGACCGCACTGG
18427 ATCACTTGAA
1 ATCACTTGAA
18437 ACTCGGCAAA
Statistics
Matches: 197, Mismatches: 26, Indels: 5
0.86 0.11 0.02
Matches are distributed among these distances:
106 4 0.02
107 67 0.34
108 126 0.64
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (108 bp):
ATCACTTGAAGATAACCTTAAACCACTACAAACTTACATGATTGACCGCACTGGATCACTTGAAG
ATAAACTTAAACCACTAGAGACTTTTTTGATTGACCGCACTGG
Found at i:18425 original size:162 final size:161
Alignment explanation
Indices: 18104--18436 Score: 459
Period size: 161 Copynumber: 2.1 Consensus size: 161
18094 GATTTACCGA
*
18104 ATCACTTGAAGATAAACCCAAATCACTAAAAACTTCCTTGACTGACCGCACTGGATCACTTGAAG
1 ATCACTTGAAGATAAACCCAAACCACTAAAAACTTCCTTGACTGACCGCACTGGATCACTTGAAG
* * ** * * *
18169 GTAAATTTAAACCACTGTAAACTTTTTGAACGATCGCACTAGATCACTTGAATATAACCTTAAAC
66 ATAAACTTAAACCACTACAAACTTTTTGAACGACCGCACTAGATCACTTGAAGATAAACTTAAAC
*
18234 CACTGGAGACTTACATGATTGACCGCACTGG
131 CACTAGAGACTTACATGATTGACCGCACTGG
* ** * * ** *
18265 ATCACATGAAGATAAACTTAAACCACTAGAGACTTTTTTGATTGACCGCACTGGATCACTTGAAG
1 ATCACTTGAAGATAAACCCAAACCACTAAAAACTTCCTTGACTGACCGCACTGGATCACTTGAAG
* **
18330 ATAACCTTAAACCACTACAAACTTTCTTGATTGACCGCACTAGATCACTTGAAGATAAACTTAAA
66 ATAAACTTAAACCACTACAAACTTT-TTGAACGACCGCACTAGATCACTTGAAGATAAACTTAAA
* *
18395 CCACTAGAGACTTTCTTGATTGACCGCACTGG
130 CCACTAGAGACTTACATGATTGACCGCACTGG
18427 ATCACTTGAA
1 ATCACTTGAA
18437 ACTCGGCAAA
Statistics
Matches: 148, Mismatches: 23, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
161 76 0.51
162 72 0.49
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (161 bp):
ATCACTTGAAGATAAACCCAAACCACTAAAAACTTCCTTGACTGACCGCACTGGATCACTTGAAG
ATAAACTTAAACCACTACAAACTTTTTGAACGACCGCACTAGATCACTTGAAGATAAACTTAAAC
CACTAGAGACTTACATGATTGACCGCACTGG
Found at i:20088 original size:15 final size:16
Alignment explanation
Indices: 20055--20088 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
20045 TTTATTACAT
*
20055 CTTTTTTCTTTTTCAC
1 CTTTTTTCATTTTCAC
20071 CTTTTTTCATTTTC-C
1 CTTTTTTCATTTTCAC
20086 CTT
1 CTT
20089 CTTGCTTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.06, C:0.26, G:0.00, T:0.68
Consensus pattern (16 bp):
CTTTTTTCATTTTCAC
Found at i:20324 original size:21 final size:23
Alignment explanation
Indices: 20281--20330 Score: 68
Period size: 21 Copynumber: 2.3 Consensus size: 23
20271 TAGGCCAAGT
20281 TTTTTTATTTATTTATTTATTTC
1 TTTTTTATTTATTTATTTATTTC
* *
20304 TTTTTT-TTTCTTT-TTTCTTTC
1 TTTTTTATTTATTTATTTATTTC
20325 TTTTTT
1 TTTTTT
20331 CCTTGAGTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 13 0.52
22 6 0.24
23 6 0.24
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.84
Consensus pattern (23 bp):
TTTTTTATTTATTTATTTATTTC
Found at i:20331 original size:11 final size:11
Alignment explanation
Indices: 20281--20330 Score: 66
Period size: 11 Copynumber: 4.5 Consensus size: 11
20271 TAGGCCAAGT
*
20281 TTTTTTATTTA
1 TTTTTTATTTC
20292 TTTATTTATTTC
1 TTT-TTTATTTC
20304 TTTTTT-TTTC
1 TTTTTTATTTC
*
20314 TTTTTTCTTTC
1 TTTTTTATTTC
20325 TTTTTT
1 TTTTTT
20331 CCTTGAGTTG
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
10 10 0.28
11 16 0.44
12 10 0.28
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTTTTATTTC
Found at i:28409 original size:14 final size:14
Alignment explanation
Indices: 28372--28423 Score: 52
Period size: 14 Copynumber: 3.7 Consensus size: 14
28362 ACTCAAAACC
* *
28372 TTTTTGAAAACTCA
1 TTTTTGAAAACACT
*
28386 TTTTTAAAAAC-CT
1 TTTTTGAAAACACT
*
28399 TTTCTTGAAAACAAT
1 TTT-TTGAAAACACT
28414 TTTTTGAAAA
1 TTTTTGAAAA
28424 ATGTCTCTTG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
13 4 0.12
14 24 0.75
15 4 0.12
ACGTcount: A:0.38, C:0.12, G:0.06, T:0.44
Consensus pattern (14 bp):
TTTTTGAAAACACT
Found at i:28416 original size:26 final size:25
Alignment explanation
Indices: 28366--28416 Score: 59
Period size: 26 Copynumber: 2.0 Consensus size: 25
28356 TTAAAAACTC
*
28366 AAAACCTTTTTGAAAACTCATTTTTA
1 AAAACCTTTTTGAAAAC-CAATTTTA
28392 AAAACCTTTTCTTGAAAA-CAATTTT
1 AAAACC-TTT-TTGAAAACCAATTTT
28417 TTGAAAAATG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
26 12 0.55
27 3 0.14
28 7 0.32
ACGTcount: A:0.39, C:0.16, G:0.04, T:0.41
Consensus pattern (25 bp):
AAAACCTTTTTGAAAACCAATTTTA
Found at i:28417 original size:28 final size:27
Alignment explanation
Indices: 28366--28424 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 27
28356 TTAAAAACTC
*
28366 AAAACCTTTTTGAAAACTCATTTTT-A
1 AAAACCTTTTTGAAAACTAATTTTTGA
28392 AAAACCTTTTCTTGAAAAC-AATTTTTTGA
1 AAAACC-TTT-TTGAAAACTAA-TTTTTGA
28421 AAAA
1 AAAA
28425 TGTCTCTTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
26 6 0.21
27 4 0.14
28 13 0.46
29 5 0.18
ACGTcount: A:0.42, C:0.14, G:0.05, T:0.39
Consensus pattern (27 bp):
AAAACCTTTTTGAAAACTAATTTTTGA
Found at i:30328 original size:15 final size:16
Alignment explanation
Indices: 30295--30334 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
30285 TTACTTTGCT
30295 TTGTTTTCTAGTATAA
1 TTGTTTTCTAGTATAA
*
30311 TTGTTTTCT-GTTTAA
1 TTGTTTTCTAGTATAA
*
30326 TTGCTTTCT
1 TTGTTTTCT
30335 TTCAACATCT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 13 0.59
16 9 0.41
ACGTcount: A:0.15, C:0.10, G:0.12, T:0.62
Consensus pattern (16 bp):
TTGTTTTCTAGTATAA
Found at i:30862 original size:24 final size:24
Alignment explanation
Indices: 30834--30885 Score: 79
Period size: 24 Copynumber: 2.1 Consensus size: 24
30824 TTTTAATTTA
30834 AAAAAAAAGAGAGTTTT-TGCGTCAT
1 AAAAAAAA-AGA-TTTTCTGCGTCAT
30859 AAAAAAAAAGATTTTCTGCGTCAT
1 AAAAAAAAAGATTTTCTGCGTCAT
30883 AAA
1 AAA
30886 TTAAAAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
23 4 0.15
24 14 0.54
25 8 0.31
ACGTcount: A:0.48, C:0.10, G:0.15, T:0.27
Consensus pattern (24 bp):
AAAAAAAAAGATTTTCTGCGTCAT
Found at i:37864 original size:59 final size:59
Alignment explanation
Indices: 37798--38244 Score: 634
Period size: 59 Copynumber: 7.6 Consensus size: 59
37788 CCTTTCTTTA
* * *
37798 TTAAAATCTTGTTTGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCCTATCTTGTTT
1 TTAAAATCCTGTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTTATCTTGTTT
* *
37857 TTAAAATCCTGTTCGAGGTCTCTGTTAGAGAGTTTTC-AGTCTAAATCTTATCTTG-TT
1 TTAAAATCCTGTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTTATCTTGTTT
* * *
37914 TTAAAATCCTATTTGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCCTATCTTGTTT
1 TTAAAATCCTGTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTTATCTTGTTT
* * *
37973 TTAAAATCCTGTTCGAGGTCTCTATTAGAGAGTTTTCAGTTCTAAATCTTATCTTG-TT
1 TTAAAATCCTGTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTTATCTTGTTT
38031 TTAAAATCCTGTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTTATCTTGTTT
1 TTAAAATCCTGTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTTATCTTGTTT
* * * * *
38090 GTAAAATCCTGGTCGAGGTCTTTATTAGAGAGTTTTCAATTCAAAATCCTATCTTGTTTTTTTT
1 TTAAAATCCTGTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTTATCTTG-----TTT
* *
38154 TTTAAATCCTGTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCTAAATCTTATCTTG-TT
1 TTAAAATCCTGTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTTATCTTGTTT
*
38212 TTAAAATCCTGTTCGAGATCTCTGATT-GAGAGT
1 TTAAAATCCTGTTCGAGGTCTCTG-TTAGAGAGT
38245 CTATATTTCA
Statistics
Matches: 346, Mismatches: 33, Indels: 19
0.87 0.08 0.05
Matches are distributed among these distances:
57 37 0.11
58 115 0.33
59 142 0.41
64 52 0.15
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.44
Consensus pattern (59 bp):
TTAAAATCCTGTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTTATCTTGTTT
Found at i:38106 original size:117 final size:117
Alignment explanation
Indices: 37798--38244 Score: 666
Period size: 117 Copynumber: 3.8 Consensus size: 117
37788 CCTTTCTTTA
* *
37798 TTAAAATCTTGTTTGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCCTATCTTGTTTTTAAAA
1 TTAAAATCCTGTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCCTATCTTGTTTTTAAAA
*
37863 TCCTGTTCGAGGTCTCTGTTAGAGAGTTTTCAG-TCTAAATCTTATCTTGTT
66 TCCTGTTCGAGGTCTCTATTAGAGAGTTTTCAGTTCTAAATCTTATCTTGTT
* *
37914 TTAAAATCCTATTTGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCCTATCTTGTTTTTAAAA
1 TTAAAATCCTGTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCCTATCTTGTTTTTAAAA
37979 TCCTGTTCGAGGTCTCTATTAGAGAGTTTTCAGTTCTAAATCTTATCTTGTT
66 TCCTGTTCGAGGTCTCTATTAGAGAGTTTTCAGTTCTAAATCTTATCTTGTT
* *
38031 TTAAAATCCTGTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTTATCTTGTTTGTAAAA
1 TTAAAATCCTGTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCCTATCTTGTTTTTAAAA
* * * * *
38096 TCCTGGTCGAGGTCTTTATTAGAGAGTTTTCAATTCAAAATCCTATCTTGTTTTTTTT
66 TCCTGTTCGAGGTCTCTATTAGAGAGTTTTCAGTTCTAAATCTTATCTTG------TT
* * *
38154 TTTAAATCCTGTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCTAAATCTTATCTTG-TTTTAAAA
1 TTAAAATCCTGTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCCTATCTTGTTTTTAAAA
*
38218 TCCTGTTCGAGATCTCTGATT-GAGAGT
66 TCCTGTTCGAGGTCTCT-ATTAGAGAGT
38245 CTATATTTCA
Statistics
Matches: 305, Mismatches: 18, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
116 95 0.31
117 124 0.41
122 27 0.09
123 59 0.19
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.44
Consensus pattern (117 bp):
TTAAAATCCTGTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCCTATCTTGTTTTTAAAA
TCCTGTTCGAGGTCTCTATTAGAGAGTTTTCAGTTCTAAATCTTATCTTGTT
Found at i:38524 original size:29 final size:29
Alignment explanation
Indices: 38492--38664 Score: 231
Period size: 29 Copynumber: 5.9 Consensus size: 29
38482 TTGCTCGCCT
38492 AGGGGCATTTTGGTCATTTTTGCTCA-CC
1 AGGGGCATTTTGGTCATTTTTGCTCATCC
* *
38520 GAGGGGCATTTTGGTCATTTTTGCACGTCC
1 -AGGGGCATTTTGGTCATTTTTGCTCATCC
*
38550 AAGGGGCATTTTGGTCATTTTTGCACATCC
1 -AGGGGCATTTTGGTCATTTTTGCTCATCC
* * * *
38580 AAGGGCATTATGGCCATTTTTGCGCATCC
1 AGGGGCATTTTGGTCATTTTTGCTCATCC
38609 AGGGGCATTTTGGTCATTTTTGCTCATCC
1 AGGGGCATTTTGGTCATTTTTGCTCATCC
* * *
38638 AAGGGCATTTTGGCCATTTTTGGTCAT
1 AGGGGCATTTTGGTCATTTTTGCTCAT
38665 TTTTGCTCAT
Statistics
Matches: 128, Mismatches: 15, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
29 98 0.77
30 30 0.23
ACGTcount: A:0.17, C:0.20, G:0.25, T:0.38
Consensus pattern (29 bp):
AGGGGCATTTTGGTCATTTTTGCTCATCC
Found at i:38630 original size:88 final size:87
Alignment explanation
Indices: 38494--38659 Score: 253
Period size: 88 Copynumber: 1.9 Consensus size: 87
38484 GCTCGCCTAG
* * * *
38494 GGGCATTTTGGTCATTTTTGCTCACCGAGGGGCATTTTGGTCATTTTTGCACGTCCAAGGGGCAT
1 GGGCATTATGGCCATTTTTGCGCACCGAGGGGCATTTTGGTCATTTTTGCACATCCAA-GGGCAT
*
38559 TTTGGTCATTTTTGCACATCCAA
65 TTTGGCCATTTTTGCACATCCAA
*
38582 GGGCATTATGGCCATTTTTGCGCATCC-AGGGGCATTTTGGTCATTTTTGCTCATCCAAGGGCAT
1 GGGCATTATGGCCATTTTTGCGCA-CCGAGGGGCATTTTGGTCATTTTTGCACATCCAAGGGCAT
38646 TTTGGCCATTTTTG
65 TTTGGCCATTTTTG
38660 GTCATTTTTG
Statistics
Matches: 71, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
87 19 0.27
88 50 0.70
89 2 0.03
ACGTcount: A:0.16, C:0.20, G:0.25, T:0.38
Consensus pattern (87 bp):
GGGCATTATGGCCATTTTTGCGCACCGAGGGGCATTTTGGTCATTTTTGCACATCCAAGGGCATT
TTGGCCATTTTTGCACATCCAA
Found at i:38637 original size:58 final size:59
Alignment explanation
Indices: 38492--38659 Score: 259
Period size: 58 Copynumber: 2.9 Consensus size: 59
38482 TTGCTCGCCT
* * *
38492 AGGGGCATTTTGGTCATTTTTGCTCA-CCGAGGGGCATTTTGGTCATTTTTGCACGTCCA
1 AGGGGCATTTTGGTCATTTTTGCTCATCC-AAGGGCATTTTGGCCATTTTTGCACATCCA
* * *
38551 AGGGGCATTTTGGTCATTTTTGCACATCCAAGGGCATTATGGCCATTTTTGCGCATCC-
1 AGGGGCATTTTGGTCATTTTTGCTCATCCAAGGGCATTTTGGCCATTTTTGCACATCCA
38609 AGGGGCATTTTGGTCATTTTTGCTCATCCAAGGGCATTTTGGCCATTTTTG
1 AGGGGCATTTTGGTCATTTTTGCTCATCCAAGGGCATTTTGGCCATTTTTG
38660 GTCATTTTTG
Statistics
Matches: 100, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
58 49 0.49
59 49 0.49
60 2 0.02
ACGTcount: A:0.17, C:0.20, G:0.26, T:0.38
Consensus pattern (59 bp):
AGGGGCATTTTGGTCATTTTTGCTCATCCAAGGGCATTTTGGCCATTTTTGCACATCCA
Found at i:38667 original size:39 final size:39
Alignment explanation
Indices: 38616--38696 Score: 135
Period size: 39 Copynumber: 2.1 Consensus size: 39
38606 TCCAGGGGCA
38616 TTTTGGTCATTTTTGCTCATCCAAGGGCATTTTGGCCAT
1 TTTTGGTCATTTTTGCTCATCCAAGGGCATTTTGGCCAT
* * *
38655 TTTTGGTCATTTTTGCTCATTCAGGGGCATTTTGGTCAT
1 TTTTGGTCATTTTTGCTCATCCAAGGGCATTTTGGCCAT
38694 TTT
1 TTT
38697 GCATACTCTA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.14, C:0.17, G:0.21, T:0.48
Consensus pattern (39 bp):
TTTTGGTCATTTTTGCTCATCCAAGGGCATTTTGGCCAT
Found at i:38685 original size:20 final size:20
Alignment explanation
Indices: 38623--38687 Score: 60
Period size: 20 Copynumber: 3.3 Consensus size: 20
38613 GCATTTTGGT
*
38623 CATTTTTGCTCATCCAAGGG
1 CATTTTTGCTCATTCAAGGG
* *** *
38643 CATTTTGGC-CATTTTTGGT
1 CATTTTTGCTCATTCAAGGG
*
38662 CATTTTTGCTCATTCAGGGG
1 CATTTTTGCTCATTCAAGGG
38682 CATTTT
1 CATTTT
38688 GGTCATTTTG
Statistics
Matches: 33, Mismatches: 11, Indels: 2
0.72 0.24 0.04
Matches are distributed among these distances:
19 13 0.39
20 20 0.61
ACGTcount: A:0.15, C:0.20, G:0.20, T:0.45
Consensus pattern (20 bp):
CATTTTTGCTCATTCAAGGG
Found at i:50601 original size:47 final size:46
Alignment explanation
Indices: 50535--50981 Score: 505
Period size: 47 Copynumber: 10.1 Consensus size: 46
50525 TTGACTACTC
* * *
50535 TTTACTACTTAGTTCAATTACCTGGACTTAAACTAATTTCTTCTTCT
1 TTTACTACTTAGTTTAATTACCTAGAATTAAACTAATTTC-TCTTCT
50582 TTTACTACTTAGTTTAATTACC-----TTAAACTAA-TT-TCTTC-
1 TTTACTACTTAGTTTAATTACCTAGAATTAAACTAATTTCTCTTCT
*
50620 ---A-T-CTTAGTTTAATTACCTGGAATTAAACTAATTTCTTCTTCT
1 TTTACTACTTAGTTTAATTACCTAGAATTAAACTAATTTC-TCTTCT
*
50662 TTTACTACTTAGTTTAATTA-CTAGAATTAAACTAATTTCTTTTTCT
1 TTTACTACTTAGTTTAATTACCTAGAATTAAACTAATTTC-TCTTCT
*
50708 TTTACTACTTAGTCTAATTACCTAGAATTAAACTAATCTTCTCTTCT
1 TTTACTACTTAGTTTAATTACCTAGAATTAAACTAAT-TTCTCTTCT
50755 TTTACTACTTAG----------T--AATTAAACTAATCTTCTCTTCT
1 TTTACTACTTAGTTTAATTACCTAGAATTAAACTAAT-TTCTCTTCT
* *
50790 TTTACTACTTAGTTTAATTACCTAGAATTAAACTAATCTCTTTTTCT
1 TTTACTACTTAGTTTAATTACCTAGAATTAAACTAATTTC-TCTTCT
* * * *
50837 TTTGCTACTTAGTTTAATTACCCAAAATTAAACTAAGCTTCTCTTCT
1 TTTACTACTTAGTTTAATTACCTAGAATTAAACTAA-TTTCTCTTCT
* *
50884 TTTACTACTTAGTTTAATTACCTAGAATTGAACCAATCTTCTCTTCT
1 TTTACTACTTAGTTTAATTACCTAGAATTAAACTAAT-TTCTCTTCT
50931 TTTACTACTTAGTTTAATTACCTAGAATTAAACTAATCTTCTCTTCT
1 TTTACTACTTAGTTTAATTACCTAGAATTAAACTAAT-TTCTCTTCT
50978 TTTA
1 TTTA
50982 TTTTAAAATT
Statistics
Matches: 348, Mismatches: 21, Indels: 62
0.81 0.05 0.14
Matches are distributed among these distances:
33 15 0.04
34 1 0.00
35 35 0.10
37 1 0.00
38 9 0.03
39 7 0.02
41 7 0.02
42 9 0.03
45 2 0.01
46 46 0.13
47 211 0.61
48 5 0.01
ACGTcount: A:0.29, C:0.19, G:0.05, T:0.47
Consensus pattern (46 bp):
TTTACTACTTAGTTTAATTACCTAGAATTAAACTAATTTCTCTTCT
Found at i:50779 original size:35 final size:35
Alignment explanation
Indices: 50733--50802 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
50723 AATTACCTAG
50733 AATTAAACTAATCTTCTCTTCTTTTACTACTTAGT
1 AATTAAACTAATCTTCTCTTCTTTTACTACTTAGT
50768 AATTAAACTAATCTTCTCTTCTTTTACTACTTAGT
1 AATTAAACTAATCTTCTCTTCTTTTACTACTTAGT
50803 TTAATTACCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.29, C:0.20, G:0.03, T:0.49
Consensus pattern (35 bp):
AATTAAACTAATCTTCTCTTCTTTTACTACTTAGT
Found at i:50846 original size:129 final size:127
Alignment explanation
Indices: 50535--50969 Score: 504
Period size: 129 Copynumber: 3.3 Consensus size: 127
50525 TTGACTACTC
* * * * *
50535 TTTACTACTTAGTTCAATTACCTGGACTTAAACTAATTTCTTCTTCTTTTACTACTTAGTTTAAT
1 TTTACTACTTAGTTTAATTACCTAGAATTAAACTAATCTCTTTTTCTTTTACTACTTAGTTTAAT
* * * * *
50600 TACC---TTAAACTAATTTCTTCATCTTAGTTTAATTACCT-GGAATTAAACTAAT-TTCTTCTT
66 TACCAAATTAAACTAA--TCTTC-TCTT-CTTTTACTACTTAGTAATTAAACTAATCTTC-TCTT
50660 CT
126 CT
* *
50662 TTTACTACTTAGTTTAATTA-CTAGAATTAAACTAATTTCTTTTTCTTTTACTACTTAGTCTAAT
1 TTTACTACTTAGTTTAATTACCTAGAATTAAACTAATCTCTTTTTCTTTTACTACTTAGTTTAAT
50726 TACCTAGAATTAAACTAATCTTCTCTTCTTTTACTACTTAGTAATTAAACTAATCTTCTCTTCT
66 TACC-A-AATTAAACTAATCTTCTCTTCTTTTACTACTTAGTAATTAAACTAATCTTCTCTTCT
*
50790 TTTACTACTTAGTTTAATTACCTAGAATTAAACTAATCTCTTTTTCTTTTGCTACTTAGTTTAAT
1 TTTACTACTTAGTTTAATTACCTAGAATTAAACTAATCTCTTTTTCTTTTACTACTTAGTTTAAT
* *
50855 TACCCAAAATTAAACTAAGCTTCTCTTCTTTTACTACTTAGTTTAATTACCTAGAATTGAACCAA
66 TA-CC-AAATTAAACTAATCTTCTCTTCTTTTACTACTTAG--TAA-T---T---A---AACTAA
50920 TCTTCTCTTCT
117 TCTTCTCTTCT
50931 TTTACTACTTAGTTTAATTACCTAGAATTAAACTAATCT
1 TTTACTACTTAGTTTAATTACCTAGAATTAAACTAATCT
50970 TCTCTTCTTT
Statistics
Matches: 271, Mismatches: 16, Indels: 28
0.86 0.05 0.09
Matches are distributed among these distances:
126 44 0.16
127 27 0.10
128 43 0.16
129 84 0.31
130 3 0.01
131 12 0.04
132 1 0.00
135 1 0.00
138 1 0.00
141 55 0.20
ACGTcount: A:0.29, C:0.19, G:0.05, T:0.47
Consensus pattern (127 bp):
TTTACTACTTAGTTTAATTACCTAGAATTAAACTAATCTCTTTTTCTTTTACTACTTAGTTTAAT
TACCAAATTAAACTAATCTTCTCTTCTTTTACTACTTAGTAATTAAACTAATCTTCTCTTCT
Found at i:50911 original size:176 final size:171
Alignment explanation
Indices: 50535--50943 Score: 536
Period size: 176 Copynumber: 2.4 Consensus size: 171
50525 TTGACTACTC
* * *
50535 TTTACTACTTAGTTCAATTACCTGGACTTAAACTAAT-TTCTTCTTCTTTTACTACTTAGTTTAA
1 TTTACTACTTAGTTTAATTACCTAGAATTAAACTAATCTTC-TCTTCTTTTACTACTTAG--TAA
* * *
50599 TTACCTTAAACTAATTTCTTCATCTTAGTTTAATTACCTGGAATTAAACTAATTTCTTCTTCTTT
63 TTAACTTAAACTAATTTCTTCATCTTAGTTTAATTACCTAGAATTAAACTAATCTCTTCTTCTTT
* * * *
50664 TACTACTTAGTTTAATTACTAGAATTAAACTAATTTCTTTTTCT
128 TACTACTTAGTTTAATTACCAAAATTAAACTAACTTCTTCTTCT
*
50708 TTTACTACTTAGTCTAATTACCTAGAATTAAACTAATCTTCTCTTCTTTTACTACTTAGTAATTA
1 TTTACTACTTAGTTTAATTACCTAGAATTAAACTAATCTTCTCTTCTTTTACTACTTAGTAATT-
* ** * *
50773 AAC-TAATCTTCTCTTCTTTTACTACTTAGTTTAATTACCTAGAATTAAACTAATCTCTTTTTCT
65 AACTTAAACTAAT-TTC-TTCA-T-CTTAGTTTAATTACCTAGAATTAAACTAATCTCTTCTTCT
*
50837 TTTGCTACTTAGTTTAATTACCCAAAATTAAACTAAGCTTC-TCTTCT
126 TTTACTACTTAGTTTAATTA-CCAAAATTAAACTAA-CTTCTTCTTCT
* *
50884 TTTACTACTTAGTTTAATTACCTAGAATTGAACCAATCTTCTCTTCTTTTACTACTTAGT
1 TTTACTACTTAGTTTAATTACCTAGAATTAAACTAATCTTCTCTTCTTTTACTACTTAGT
50944 TTAATTACCT
Statistics
Matches: 208, Mismatches: 20, Indels: 13
0.86 0.08 0.05
Matches are distributed among these distances:
171 11 0.05
172 5 0.02
173 54 0.26
174 4 0.02
175 56 0.27
176 75 0.36
177 3 0.01
ACGTcount: A:0.29, C:0.19, G:0.05, T:0.47
Consensus pattern (171 bp):
TTTACTACTTAGTTTAATTACCTAGAATTAAACTAATCTTCTCTTCTTTTACTACTTAGTAATTA
ACTTAAACTAATTTCTTCATCTTAGTTTAATTACCTAGAATTAAACTAATCTCTTCTTCTTTTAC
TACTTAGTTTAATTACCAAAATTAAACTAACTTCTTCTTCT
Found at i:53750 original size:17 final size:17
Alignment explanation
Indices: 53721--53759 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
53711 GTTTGGTTCC
*
53721 CTTTTCTTTCATG-TTT
1 CTTTTCTTGCATGTTTT
53737 CTTTGTCTTGCATGTTTT
1 CTTT-TCTTGCATGTTTT
53755 CTTTT
1 CTTTT
53760 ATTTGTTTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 4 0.20
17 9 0.45
18 7 0.35
ACGTcount: A:0.05, C:0.18, G:0.10, T:0.67
Consensus pattern (17 bp):
CTTTTCTTGCATGTTTT
Found at i:54569 original size:26 final size:26
Alignment explanation
Indices: 54510--54603 Score: 136
Period size: 26 Copynumber: 3.6 Consensus size: 26
54500 ACAGTAGTTT
* *
54510 TGACCAAAATGCCCCTG-GGACGAAAAA
1 TGACCAAAATGCCCCCGAGG-TG-AAAA
54537 TGACCAAAATGCCCCCGAGGTGAAAA
1 TGACCAAAATGCCCCCGAGGTGAAAA
*
54563 TGACCAAGATGCCCCCGAGGTGAAAA
1 TGACCAAAATGCCCCCGAGGTGAAAA
54589 TGACCAAAATGCCCC
1 TGACCAAAATGCCCC
54604 TGGTGAATTT
Statistics
Matches: 62, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
26 43 0.69
27 17 0.27
28 2 0.03
ACGTcount: A:0.37, C:0.29, G:0.22, T:0.12
Consensus pattern (26 bp):
TGACCAAAATGCCCCCGAGGTGAAAA
Done.