Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001234.1 Corchorus olitorius cultivar O-4 contig01234, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 616

Length: 1028
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.32


Found at i:69 original size:8 final size:9

Alignment explanation


    Indices: 33--70  Score: 60
    Period size: 9  Copynumber: 4.3  Consensus size: 9

         23 CCCAAATTAC

                     
         33 TTATGGAAA
          1 TTATGGAAA

               *     
         42 TTAAGGAAA
          1 TTATGGAAA

                     
         51 TTATGGAAA
          1 TTATGGAAA

                     
         60 TTAT-GAAA
          1 TTATGGAAA

               
         68 TTA
          1 TTA

         71 AATGAATTAA


Statistics
Matches: 27,  Mismatches: 2, Indels: 1
        0.90            0.07        0.03

Matches are distributed among these distances:
   8    7  0.26
   9   20  0.74

ACGTcount: A:0.47, C:0.00, G:0.18, T:0.34


Consensus pattern (9 bp):   
TTATGGAAA
Done.