Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012340.1 Corchorus olitorius cultivar O-4 contig12373, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68634

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
246--321
19
4.2
19
75
10
68
19
57
15
6
1.60
280--330
16
3.2
16
81
8
68
19
56
17
5
1.61
558--616
8
6.9
8
78
14
64
1
15
0
83
0.74
559--587
15
1.9
15
100
0
58
0
10
0
89
0.48
557--626
29
2.6
27
86
8
90
2
12
0
84
0.73
1169--1207
16
2.4
16
86
0
60
17
53
25
2
1.56
11016--11082
27
2.5
27
90
0
98
43
20
14
20
1.88
23295--23354
21
2.9
21
87
0
84
13
48
28
10
1.74
24428--24462
18
1.9
18
88
0
52
48
8
8
34
1.64
30756--30787
11
2.8
12
86
13
50
37
6
18
37
1.76
35672--35711
11
3.8
10
90
6
53
20
45
20
15
1.86
36352--36403
26
2.0
26
96
0
95
36
15
9
38
1.80
39804--39839
19
1.9
18
88
5
54
33
22
2
41
1.68
41352--41410
30
2.0
30
90
6
93
61
5
11
22
1.50
47422--47503
28
3.0
28
83
1
103
35
24
21
18
1.96
47735--47885
35
4.3
35
87
7
109
26
26
20
26
1.99
47757--48026
35
7.7
35
90
0
371
27
21
18
32
1.97
59872--59900
10
3.0
10
95
5
51
72
27
0
0
0.85
65438--65469
11
2.8
12
86
13
50
37
6
18
37
1.76

Tables:   1

The End!