Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01012350.1 Corchorus olitorius cultivar O-4 contig12383, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 87036
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Found at i:7570 original size:44 final size:43
Alignment explanation
Indices: 7512--7595 Score: 98
Period size: 44 Copynumber: 1.9 Consensus size: 43
7502 TTCATAGGAA
* * *
7512 AGTTTATTAAAATTTCAT-AGTTAGGTTATCAAAGTTTCATATGG
1 AGTTTATCAAAATTTCATAAG-TA-ATTATCAAAATTTCATATGG
* *
7556 AGTTTATCACAATTTTATAAGTAATTATCAAAATTTCATA
1 AGTTTATCAAAATTTCATAAGTAATTATCAAAATTTCATA
7596 AAAATATTCA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
43 15 0.44
44 17 0.50
45 2 0.06
ACGTcount: A:0.38, C:0.08, G:0.11, T:0.43
Consensus pattern (43 bp):
AGTTTATCAAAATTTCATAAGTAATTATCAAAATTTCATATGG
Found at i:7722 original size:15 final size:15
Alignment explanation
Indices: 7677--7724 Score: 53
Period size: 15 Copynumber: 3.0 Consensus size: 15
7667 ATAATAACTA
7677 AATTAA-ATATAATAT
1 AATTAATATAT-ATAT
7692 AATTTATATTATATATAT
1 AA-TTA-A-TATATATAT
7710 AATTAATATATATAT
1 AATTAATATATATAT
7725 TTTCGGTCGG
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
15 11 0.38
16 4 0.14
17 4 0.14
18 6 0.21
19 4 0.14
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
AATTAATATATATAT
Found at i:23162 original size:59 final size:60
Alignment explanation
Indices: 23078--23238 Score: 225
Period size: 59 Copynumber: 2.7 Consensus size: 60
23068 GCTAATTGCT
* * * *
23078 CAAATAAAGGCCTAATGTTTGCCAAAATGCTTAAATAAGGGTCTGCTCTTTTAATTTGGC
1 CAAATAAGGGCCTAACGTTTGCCAAAATGCTTAAATAAGGGTCCGATCTTTTAATTTGGC
* * * *
23138 CAAATAAGGGCTTAACG-TTGCCAAAATGCATAAATTAGGGTCCGATTTTTTAATTTGGC
1 CAAATAAGGGCCTAACGTTTGCCAAAATGCTTAAATAAGGGTCCGATCTTTTAATTTGGC
*
23197 CAAATAAGGGCCTAACGTTTGCCTAAAATGCTCAAATAAGGG
1 CAAATAAGGGCCTAACGTTTGCC-AAAATGCTTAAATAAGGG
23239 CTTGGAGTCG
Statistics
Matches: 87, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
59 53 0.61
60 19 0.22
61 15 0.17
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.30
Consensus pattern (60 bp):
CAAATAAGGGCCTAACGTTTGCCAAAATGCTTAAATAAGGGTCCGATCTTTTAATTTGGC
Found at i:23358 original size:29 final size:29
Alignment explanation
Indices: 23321--23418 Score: 108
Period size: 29 Copynumber: 3.3 Consensus size: 29
23311 AACATTAGGT
23321 CCTTATTTGGCCAAATTAAAAGATCGGAC
1 CCTTATTTGGCCAAATTAAAAGATCGGAC
** * * **
23350 CCTTATTTGAG-CATTTTCGATAATATTAGAC
1 CCTTATTTG-GCCAAATT--AAAAGATCGGAC
23381 CCTTATTTGGCCAAATTAAAAGATCGGAC
1 CCTTATTTGGCCAAATTAAAAGATCGGAC
23410 CCTTATTTG
1 CCTTATTTG
23419 AACATTTTGA
Statistics
Matches: 53, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
29 30 0.57
30 2 0.04
31 21 0.40
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (29 bp):
CCTTATTTGGCCAAATTAAAAGATCGGAC
Found at i:23364 original size:60 final size:60
Alignment explanation
Indices: 23289--23449 Score: 270
Period size: 60 Copynumber: 2.7 Consensus size: 60
23279 TGACGCCAGG
*
23289 CCCTTATTTGAGCATTTTCGATAACATTAGGTCCTTATTTGGCCAAATTAAAAGATCGGA
1 CCCTTATTTGAGCATTTTCGATAACATTAGGCCCTTATTTGGCCAAATTAAAAGATCGGA
* *
23349 CCCTTATTTGAGCATTTTCGATAATATTAGACCCTTATTTGGCCAAATTAAAAGATCGGA
1 CCCTTATTTGAGCATTTTCGATAACATTAGGCCCTTATTTGGCCAAATTAAAAGATCGGA
*
23409 CCCTTATTTGAACATTTT-GATAAACATTAGGCCCTTATTTG
1 CCCTTATTTGAGCATTTTCGAT-AACATTAGGCCCTTATTTG
23450 AGCAGTTAGC
Statistics
Matches: 94, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
59 3 0.03
60 91 0.97
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.37
Consensus pattern (60 bp):
CCCTTATTTGAGCATTTTCGATAACATTAGGCCCTTATTTGGCCAAATTAAAAGATCGGA
Found at i:23385 original size:31 final size:30
Alignment explanation
Indices: 23289--23453 Score: 104
Period size: 31 Copynumber: 5.5 Consensus size: 30
23279 TGACGCCAGG
*
23289 CCCTTATTTGAGCATTTTCGATAACATTAGG
1 CCCTTATTTGAGCATTTT-GATAACATTAGA
* ** * * **
23320 TCCTTATTTG-GCCAAATT-AAAAGATCGGA
1 CCCTTATTTGAG-CATTTTGATAACATTAGA
*
23349 CCCTTATTTGAGCATTTTCGATAATATTAGA
1 CCCTTATTTGAGCATTTT-GATAACATTAGA
** * * **
23380 CCCTTATTTG-GCCAAATT-AAAAGATCGGA
1 CCCTTATTTGAG-CATTTTGATAACATTAGA
* *
23409 CCCTTATTTGAACATTTTGATAAACATTAGG
1 CCCTTATTTGAGCATTTTGAT-AACATTAGA
23440 CCCTTATTTGAGCA
1 CCCTTATTTGAGCA
23454 GTTAGCCGAC
Statistics
Matches: 96, Mismatches: 30, Indels: 16
0.68 0.21 0.11
Matches are distributed among these distances:
29 40 0.42
30 4 0.04
31 52 0.54
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (30 bp):
CCCTTATTTGAGCATTTTGATAACATTAGA
Found at i:48819 original size:16 final size:15
Alignment explanation
Indices: 48786--48818 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
48776 AGGAGGGGAT
48786 AAATACAAAGAAAAA
1 AAATACAAAGAAAAA
48801 AAATACAAAGAAAAA
1 AAATACAAAGAAAAA
48816 AAA
1 AAA
48819 AAGCAGTCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.82, C:0.06, G:0.06, T:0.06
Consensus pattern (15 bp):
AAATACAAAGAAAAA
Found at i:58445 original size:2 final size:2
Alignment explanation
Indices: 58438--58466 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
58428 AACTCCTAAT
58438 TA TA TA TA -A TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
58467 AGGACTTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:60438 original size:68 final size:68
Alignment explanation
Indices: 60351--60482 Score: 205
Period size: 68 Copynumber: 1.9 Consensus size: 68
60341 ACAAATAAGG
* * *
60351 AAAAAATGGTGGGAGCACCATTAATTACATCTC-AATGCTAAACTTACATATTAAGACAATGCAT
1 AAAAAATGGTGAGAGCACCATTAATTACATC-CAAATGCTAAAATTACATATAAAGACAATGCAT
60415 AGGA
65 AGGA
60419 AAAAAATGGT-AGAGACACCATTAATTACATCCAAATGCTAAAATTACATATAAAGACAATGCAT
1 AAAAAATGGTGAGAG-CACCATTAATTACATCCAAATGCTAAAATTACATATAAAGACAATGCAT
60483 TTTCAAGCAA
Statistics
Matches: 59, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
67 4 0.07
68 55 0.93
ACGTcount: A:0.46, C:0.16, G:0.14, T:0.24
Consensus pattern (68 bp):
AAAAAATGGTGAGAGCACCATTAATTACATCCAAATGCTAAAATTACATATAAAGACAATGCATA
GGA
Found at i:62739 original size:13 final size:13
Alignment explanation
Indices: 62721--62745 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
62711 TCATGCACCC
62721 AAAACATTTTATT
1 AAAACATTTTATT
62734 AAAACATTTTAT
1 AAAACATTTTAT
62746 AAAGCAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
AAAACATTTTATT
Found at i:65736 original size:23 final size:23
Alignment explanation
Indices: 65709--65876 Score: 110
Period size: 23 Copynumber: 7.3 Consensus size: 23
65699 CATTACACAA
* * *
65709 CAACAAAGTCATCAATAAAATAG
1 CAACAAAATCAGCAATAAAACAG
65732 CAACAAAATCAGCAATAAAACAG
1 CAACAAAATCAGCAATAAAACAG
* *
65755 CAACAAAAACAACAATAAAACAG
1 CAACAAAATCAGCAATAAAACAG
* * *
65778 TATA-AAAA-CAG-TATACAAACAA
1 CA-ACAAAATCAGCAATA-AAACAG
* * * * *
65800 CAAGC-AATTGATCCATTAAACAG
1 CAA-CAAAATCAGCAATAAAACAG
* * *
65823 TAACAAAATCAACAATAAAAAAG
1 CAACAAAATCAGCAATAAAACAG
* * *
65846 CAACAAAAACAACAATAAAACAA
1 CAACAAAATCAGCAATAAAACAG
65869 CAACAAAA
1 CAACAAAA
65877 ACAGTAACAC
Statistics
Matches: 111, Mismatches: 27, Indels: 14
0.73 0.18 0.09
Matches are distributed among these distances:
21 4 0.04
22 11 0.10
23 93 0.84
24 3 0.03
ACGTcount: A:0.63, C:0.19, G:0.06, T:0.12
Consensus pattern (23 bp):
CAACAAAATCAGCAATAAAACAG
Found at i:65755 original size:11 final size:11
Alignment explanation
Indices: 65721--65777 Score: 60
Period size: 11 Copynumber: 5.0 Consensus size: 11
65711 ACAAAGTCAT
*
65721 CAATAAAATAG
1 CAATAAAACAG
*
65732 CAACAAAATCAG
1 CAATAAAA-CAG
65744 CAATAAAACAG
1 CAATAAAACAG
* *
65755 CAACAAAAACAA
1 CAA-TAAAACAG
65767 CAATAAAACAG
1 CAATAAAACAG
65778 TATAAAAACA
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
11 19 0.51
12 18 0.49
ACGTcount: A:0.65, C:0.19, G:0.07, T:0.09
Consensus pattern (11 bp):
CAATAAAACAG
Found at i:65889 original size:37 final size:37
Alignment explanation
Indices: 65848--65919 Score: 101
Period size: 37 Copynumber: 1.9 Consensus size: 37
65838 TAAAAAAGCA
65848 ACAAAAACAACAAT-AAAACAACAACAAAAACAGTAAC
1 ACAAAAACAACAATAAAAACAA-AACAAAAACAGTAAC
* * *
65885 ACAAAAACAGCAATAAAAACAATATAAAAACAGTA
1 ACAAAAACAACAATAAAAACAAAACAAAAACAGTA
65920 TAAAAACAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
37 24 0.77
38 7 0.23
ACGTcount: A:0.69, C:0.18, G:0.04, T:0.08
Consensus pattern (37 bp):
ACAAAAACAACAATAAAAACAAAACAAAAACAGTAAC
Found at i:65893 original size:23 final size:22
Alignment explanation
Indices: 65824--65931 Score: 74
Period size: 23 Copynumber: 4.6 Consensus size: 22
65814 ATTAAACAGT
* *
65824 AACAAAATCAACAATAAAAAAGC
1 AACAAAAACAACAACAAAAAA-C
*
65847 AACAAAAACAACAATAAAACAAC
1 AACAAAAACAACAACAAAA-AAC
**
65870 AACAAAAACAGTAACACAAAAAC
1 AACAAAAACAACAACA-AAAAAC
* *
65893 AGCAATAAA-AACAATATAAAAAC
1 AACAA-AAACAACAACA-AAAAAC
*
65916 AGTATAAAAACAACAA
1 A--ACAAAAACAACAA
65932 ACAGTCAGTT
Statistics
Matches: 68, Mismatches: 11, Indels: 10
0.76 0.12 0.11
Matches are distributed among these distances:
23 50 0.74
24 11 0.16
25 7 0.10
ACGTcount: A:0.70, C:0.18, G:0.04, T:0.08
Consensus pattern (22 bp):
AACAAAAACAACAACAAAAAAC
Found at i:65897 original size:91 final size:91
Alignment explanation
Indices: 65733--65898 Score: 246
Period size: 91 Copynumber: 1.8 Consensus size: 91
65723 ATAAAATAGC
* * ** * *
65733 AACAAAATCAGCAATAAAACAGCAACAAAAACAACAATAAAACAGTATAAAAACAGTATACAAAC
1 AACAAAATCAACAATAAAAAAGCAACAAAAACAACAATAAAACACAACAAAAACAGTATACAAAA
65798 AACAAGCAATTGATCCATTAAACAGT
66 AACAAGCAATTGATCCATTAAACAGT
65824 AACAAAATCAACAATAAAAAAGCAACAAAAACAACAATAAAACAACAACAAAAACAGTA-ACACA
1 AACAAAATCAACAATAAAAAAGCAACAAAAACAACAATAAAAC-ACAACAAAAACAGTATACA-A
65888 AAAAC-AGCAAT
64 AAAACAAGCAAT
65899 AAAAACAATA
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
91 50 0.75
92 17 0.25
ACGTcount: A:0.64, C:0.19, G:0.06, T:0.11
Consensus pattern (91 bp):
AACAAAATCAACAATAAAAAAGCAACAAAAACAACAATAAAACACAACAAAAACAGTATACAAAA
AACAAGCAATTGATCCATTAAACAGT
Found at i:65924 original size:10 final size:11
Alignment explanation
Indices: 65897--65928 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
65887 AAAAACAGCA
65897 ATAAAAACAAT
1 ATAAAAACAAT
*
65908 ATAAAAACAGT
1 ATAAAAACAAT
65919 ATAAAAACAA
1 ATAAAAACAA
65929 CAAACAGTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.72, C:0.09, G:0.03, T:0.16
Consensus pattern (11 bp):
ATAAAAACAAT
Found at i:70928 original size:83 final size:83
Alignment explanation
Indices: 70781--70959 Score: 340
Period size: 83 Copynumber: 2.2 Consensus size: 83
70771 TGACATGGTA
* *
70781 ATGCCACGTGGCACAAAAATGCCACGTCATACCAACCCGGCCCATTGTGGCATTGCTACGTCGGA
1 ATGCCACGTGGCACAAAAATGCCACGTCATACCAACCCGGCCCATTGTGGCATTACTACATCGGA
70846 CCAAACCGCTGGTATGGC
66 CCAAACCGCTGGTATGGC
70864 ATGCCACGTGGCACAAAAATGCCACGTCATACCAACCCGGCCCATTGTGGCATTACTACATCGGA
1 ATGCCACGTGGCACAAAAATGCCACGTCATACCAACCCGGCCCATTGTGGCATTACTACATCGGA
70929 CCAAACCGCTGGTATGGC
66 CCAAACCGCTGGTATGGC
70947 ATGCCACGTGGCA
1 ATGCCACGTGGCA
70960 TTGACGCATC
Statistics
Matches: 94, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
83 94 1.00
ACGTcount: A:0.26, C:0.32, G:0.23, T:0.18
Consensus pattern (83 bp):
ATGCCACGTGGCACAAAAATGCCACGTCATACCAACCCGGCCCATTGTGGCATTACTACATCGGA
CCAAACCGCTGGTATGGC
Found at i:77650 original size:1 final size:1
Alignment explanation
Indices: 77644--77680 Score: 74
Period size: 1 Copynumber: 37.0 Consensus size: 1
77634 GAGGGGAATT
77644 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
77681 GATTACTGCA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 36 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:79634 original size:27 final size:27
Alignment explanation
Indices: 79600--79653 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
79590 CCCTATTTCA
*
79600 AATTTGCCATTATTAAAA-ATAATTTT
1 AATTTGCCACTATTAAAATATAATTTT
79626 AATTATGCCACTATTAAAATATAATTTT
1 AATT-TGCCACTATTAAAATATAATTTT
79654 GTATATATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 4 0.16
27 13 0.52
28 8 0.32
ACGTcount: A:0.43, C:0.09, G:0.04, T:0.44
Consensus pattern (27 bp):
AATTTGCCACTATTAAAATATAATTTT
Found at i:80123 original size:17 final size:18
Alignment explanation
Indices: 80101--80134 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
80091 GGTTATAAAA
80101 AATCATAGGAA-GTTTAC
1 AATCATAGGAAGGTTTAC
80118 AATCATAGGAAGGTTTA
1 AATCATAGGAAGGTTTA
80135 TTAAAATTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.29
Consensus pattern (18 bp):
AATCATAGGAAGGTTTAC
Found at i:80166 original size:22 final size:22
Alignment explanation
Indices: 80120--80253 Score: 103
Period size: 22 Copynumber: 6.0 Consensus size: 22
80110 AAGTTTACAA
* *
80120 TCATAGGAAGGTTTATTAAAATT
1 TCATAGGTAGG-TTATCAAAATT
* *
80143 TCATAGTTAGGTTATCAAAGTT
1 TCATAGGTAGGTTATCAAAATT
* *
80165 TCATATGG-AGTTTATCACAATT
1 TCATA-GGTAGGTTATCAAAATT
**
80187 TCATAGGTAAATTATCAAAATT
1 TCATAGGTAGGTTATCAAAATT
*
80209 TCATAGCGT-GGTTATCAAATTT
1 TCATAG-GTAGGTTATCAAAATT
* * *
80231 TAATTGGATA-GTTATCACAATT
1 TCATAGG-TAGGTTATCAAAATT
80253 T
1 T
80254 TATAAAAATA
Statistics
Matches: 88, Mismatches: 18, Indels: 11
0.75 0.15 0.09
Matches are distributed among these distances:
21 3 0.03
22 73 0.83
23 12 0.14
ACGTcount: A:0.35, C:0.10, G:0.15, T:0.40
Consensus pattern (22 bp):
TCATAGGTAGGTTATCAAAATT
Found at i:80187 original size:44 final size:44
Alignment explanation
Indices: 80130--80213 Score: 114
Period size: 44 Copynumber: 1.9 Consensus size: 44
80120 TCATAGGAAG
* * ** *
80130 GTTTATTAAAATTTCATAGTTAGGTTATCAAAGTTTCATATGGA
1 GTTTATCAAAATTTCATAGGTAAATTATCAAAATTTCATATGGA
*
80174 GTTTATCACAATTTCATAGGTAAATTATCAAAATTTCATA
1 GTTTATCAAAATTTCATAGGTAAATTATCAAAATTTCATA
80214 GCGTGGTTAT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 34 1.00
ACGTcount: A:0.37, C:0.10, G:0.12, T:0.42
Consensus pattern (44 bp):
GTTTATCAAAATTTCATAGGTAAATTATCAAAATTTCATATGGA
Found at i:81469 original size:20 final size:20
Alignment explanation
Indices: 81444--81485 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
81434 AATCTATATC
81444 TTTCTTTGCTTCAATACTTA
1 TTTCTTTGCTTCAATACTTA
81464 TTTCTTTGCTTCAATACTTA
1 TTTCTTTGCTTCAATACTTA
81484 TT
1 TT
81486 GCTTGCTTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.19, C:0.19, G:0.05, T:0.57
Consensus pattern (20 bp):
TTTCTTTGCTTCAATACTTA
Found at i:85604 original size:36 final size:36
Alignment explanation
Indices: 85563--85632 Score: 113
Period size: 36 Copynumber: 1.9 Consensus size: 36
85553 ATTTTCTCTA
85563 ATTTATTTCATCAACGTCTAAAGACATTGGCTAATC
1 ATTTATTTCATCAACGTCTAAAGACATTGGCTAATC
* * *
85599 ATTTATTTCATCAATGTCTCAAGACATTGTCTAA
1 ATTTATTTCATCAACGTCTAAAGACATTGGCTAA
85633 ATCTCCATCA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.33, C:0.19, G:0.10, T:0.39
Consensus pattern (36 bp):
ATTTATTTCATCAACGTCTAAAGACATTGGCTAATC
Done.