Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012351.1 Corchorus olitorius cultivar O-4 contig12384, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42835

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2186--2249
31
2.0
32
96
3
121
28
21
3
46
1.66
16791--16835
21
2.1
21
87
0
63
15
22
31
31
1.95
16769--16919
75
2.0
76
82
8
184
18
27
27
26
1.98
19683--19713
16
1.9
16
100
0
62
16
6
19
58
1.59
23924--23981
26
2.2
26
90
0
89
43
12
17
27
1.84
26309--26341
14
2.4
14
100
0
66
51
6
36
6
1.51
27096--27146
25
2.0
25
92
0
84
17
33
15
33
1.92
28488--28513
3
8.7
3
100
0
52
65
0
34
0
0.93
30519--30554
19
1.9
18
88
5
54
33
22
2
41
1.68
31789--31834
22
2.1
22
100
0
92
65
13
4
17
1.42
35917--35952
19
1.9
18
88
5
54
33
22
2
41
1.68
36207--36556
50
6.9
52
81
6
301
46
3
14
36
1.61
36221--36631
100
4.0
101
81
7
361
46
3
14
35
1.62
37119--37189
26
2.7
27
80
4
72
18
15
26
39
1.90
38695--38737
21
2.0
21
100
0
86
41
16
9
32
1.80
38698--38743
21
2.2
21
92
0
74
43
19
8
28
1.80
41295--41336
15
2.7
15
88
3
66
66
11
7
14
1.43

Tables:   1

The End!