Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012353.1 Corchorus olitorius cultivar O-4 contig12386, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68006

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
612--645
17
2.0
17
88
0
50
17
0
17
64
1.29
5137--5161
2
12.5
2
100
0
50
52
0
0
48
1.00
5268--5312
18
2.5
18
100
0
90
51
13
26
8
1.70
5415--5486
31
2.3
31
75
17
78
27
4
8
59
1.45
5740--5786
13
3.8
12
78
13
51
40
0
4
55
1.19
5915--5963
17
2.9
17
90
0
80
26
48
22
2
1.61
5954--6073
16
7.6
16
71
18
90
37
38
14
10
1.79
5954--6073
32
3.8
32
80
7
129
37
38
14
10
1.79
7129--7175
26
1.9
24
87
12
69
27
27
4
40
1.75
12917--13358
227
1.9
227
93
0
767
20
19
26
32
1.97
22451--22525
2
40.0
2
74
12
52
49
1
1
48
1.18
22556--22615
24
2.5
24
86
7
79
38
3
5
53
1.39
22599--22656
21
2.8
20
80
12
55
53
1
0
44
1.10
22598--22657
27
2.2
27
82
11
70
53
1
0
45
1.10
23789--23822
17
1.9
17
94
5
59
35
2
0
61
1.11
24283--24341
18
3.5
18
66
17
54
37
6
25
30
1.82
24281--24345
32
2.0
32
100
0
130
38
9
24
27
1.86
26587--26624
20
1.9
20
94
0
67
39
10
18
31
1.85
27470--27513
14
2.9
15
87
9
63
36
0
6
56
1.26
27441--27548
16
6.8
16
73
17
82
48
0
2
48
1.22
27488--27547
2
34.0
2
74
24
55
50
0
1
48
1.11
39663--39719
21
2.7
21
94
0
96
28
28
17
26
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44679--44719
21
2.0
21
85
9
57
26
26
12
34
1.92
45177--45223
26
1.9
24
87
12
69
40
4
27
27
1.75
46074--46193
21
5.7
21
89
3
172
25
27
18
29
1.98
49842--49868
2
13.5
2
100
0
54
48
0
0
51
1.00
50024--50048
2
12.5
2
100
0
50
48
0
0
52
1.00
54123--54175
27
2.0
27
85
3
72
45
5
3
45
1.45
57240--57272
17
1.9
17
88
11
50
42
6
15
36
1.71
58403--58461
19
3.0
19
79
13
57
40
18
8
32
1.81
66087--66135
24
2.0
24
100
0
98
53
18
8
20
1.70
67210--67258
6
7.7
6
82
11
53
79
12
2
6
0.99

Tables:   1

The End!