Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001236.1 Corchorus olitorius cultivar O-4 contig01236, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 745

Length: 1242
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.38


Found at i:1113 original size:21 final size:21

Alignment explanation


    Indices: 1064--1118  Score: 62
    Period size: 21  Copynumber: 2.7  Consensus size: 21

       1054 GTTTATCCAA

                                 
       1064 GTTACTAAAAAGTTTAACATG
          1 GTTACTAAAAAGTTTAACATG

             *                     
       1085 GGTA-TAAAAAGCTTTCAA-AT-
          1 GTTACTAAAAAG-TTT-AACATG

                          
       1105 GTTACTAAAAAGTT
          1 GTTACTAAAAAGTT

       1119 AGTGGAGTTT


Statistics
Matches: 29,  Mismatches: 2, Indels: 7
        0.76            0.05        0.18

Matches are distributed among these distances:
  20   12  0.41
  21   15  0.52
  22    2  0.07

ACGTcount: A:0.44, C:0.09, G:0.15, T:0.33


Consensus pattern (21 bp):   
GTTACTAAAAAGTTTAACATG
Done.