Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012360.1 Corchorus olitorius cultivar O-4 contig12393, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23949

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1811
334
5.4
335
93
1
2937
33
14
16
35
1.89
1900--2026
64
2.0
64
90
3
204
47
20
3
29
1.66
2053--2082
2
15.5
2
93
6
53
50
0
0
50
1.00
4504--4648
73
2.0
73
87
6
213
44
11
10
34
1.74
5274--5317
21
2.1
21
91
4
72
59
6
4
29
1.44
7071--7109
21
1.9
20
89
5
60
35
15
5
43
1.69
10046--10075
16
1.9
15
93
6
51
40
0
6
53
1.27
13697--13747
22
2.3
23
82
3
59
37
5
7
49
1.56
20343--20367
11
2.3
11
100
0
50
36
20
8
36
1.82
21555--21714
60
2.7
60
83
0
194
37
14
17
30
1.90
21759--21896
60
2.3
60
89
0
204
31
16
11
40
1.84
21759--21920
60
2.7
60
85
3
175
32
16
11
39
1.85

Tables:   1

The End!