Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012362.1 Corchorus olitorius cultivar O-4 contig12395, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81392

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--107
2
53.5
2
100
0
214
0
50
0
49
1.00
1213--2520
332
4.0
330
83
4
1638
31
15
16
36
1.91
3015--3068
28
1.9
28
96
0
99
25
16
20
37
1.93
3169--3271
50
2.1
50
94
3
181
19
3
33
43
1.69
10195--10222
2
14.0
2
100
0
56
50
0
50
0
1.00
13410--13463
28
1.9
28
88
0
81
42
1
7
48
1.42
16560--16595
17
2.1
17
100
0
72
52
16
0
30
1.44
16604--16636
16
2.1
16
88
11
50
66
21
0
12
1.23
16579--16728
79
1.9
79
97
0
282
50
22
2
24
1.62
16683--16715
16
2.1
16
88
11
50
66
21
0
12
1.23
17540--17581
7
6.0
7
86
8
59
47
0
0
52
1.00
17538--17583
2
25.5
2
79
20
57
47
0
0
52
1.00
23978--24040
3
21.0
3
100
0
126
66
0
0
33
0.92
26074--26152
31
2.7
29
78
20
83
31
25
13
29
1.94
27413--27464
19
2.7
20
84
6
70
15
32
19
32
1.93
29583--29610
14
2.0
14
100
0
56
21
21
21
35
1.96
32895--32920
6
4.3
6
100
0
52
15
0
46
38
1.46
48631--48709
40
2.0
40
100
0
158
22
32
24
20
1.97
52119--52144
13
2.0
13
100
0
52
46
0
0
53
1.00
54497--54522
7
3.7
7
100
0
52
61
11
0
26
1.30
61260--61285
6
4.3
6
100
0
52
15
0
34
50
1.45
61771--61805
3
11.7
3
100
0
70
34
0
0
65
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64253--64281
3
9.7
3
100
0
58
34
0
0
65
0.93
65720--65929
27
7.9
27
67
21
88
37
6
5
50
1.53
65712--65974
79
3.3
78
88
5
384
35
7
5
50
1.54
66081--66131
26
2.0
26
88
7
77
31
9
3
54
1.51
66416--66499
22
3.8
22
84
6
107
36
11
15
35
1.84
66597--66627
15
2.1
15
100
0
62
32
6
19
41
1.77
66914--66955
22
1.9
22
95
0
75
40
2
19
38
1.64
66919--67435
22
23.3
22
70
10
214
38
8
16
35
1.80
67233--67297
25
2.8
22
84
15
78
43
10
10
35
1.75
67280--67435
67
2.4
62
83
9
206
38
7
16
37
1.76
67502--67927
22
19.6
22
67
14
91
36
9
16
38
1.81
67523--67679
44
3.8
42
71
15
112
38
8
16
36
1.79
67644--67751
45
2.4
42
77
14
110
35
5
18
40
1.74
67757--67858
44
2.3
44
80
6
109
34
11
12
41
1.80
67772--67907
44
3.1
44
80
4
123
34
11
17
36
1.85
67977--68021
23
2.0
23
86
0
63
42
6
8
42
1.62
68102--68147
24
1.9
24
95
0
83
45
0
10
43
1.39
68542--68568
6
4.5
6
100
0
54
29
33
18
18
1.95
77171--77200
15
1.9
16
93
6
53
40
10
10
40
1.72
79763--79841
40
2.0
40
90
5
124
36
21
5
36
1.76

Tables:   1

The End!