Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01012363.1 Corchorus olitorius cultivar O-4 contig12396, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 44238
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Found at i:8 original size:3 final size:3
Alignment explanation
Indices: 1--90 Score: 137
Period size: 3 Copynumber: 29.0 Consensus size: 3
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G-A GAGA GAGA GAGA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA-A GA-A GA-A
48 GAGA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GA-A GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
91 AGAGAAAAGA
Statistics
Matches: 85, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.02
3 68 0.80
4 15 0.18
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:2293 original size:181 final size:178
Alignment explanation
Indices: 1931--2307 Score: 400
Period size: 178 Copynumber: 2.1 Consensus size: 178
1921 ACAAATTATG
* * * *
1931 TAATATTAAGTAGACCGTTTATTCCCGCTAACCGAAATAACTAATTCTTTGGAAGCATTTTTTAT
1 TAATATTAAGTAGACCGTCTATTCCCGCTAACCGAAACAACAAATTCTTTGGAAGCATTTTTGAT
* *
1996 ACCTTGAACATTGAATTTAGTTTTTGAGCCCCTAATGAAAGTTGTAGATCATGGAACAACCTTTC
66 ACCTTGAACATTAAATTTAGTTTTCGAGCCCCTAATGAAAGTTGTAGATCATGGAACAACCTTTC
* * * * * * *
2061 GAGAGACATTTGAATCACTTCAATCAGACATCTGGAGCAAAAGTTATA
131 AAGAGACACTTAAATCACTTCAATCAGACAACCGGAGCAAAAATAATA
* * * * *
2109 TAATATTAAGTGGACCGTCTATTCTCGTTAACTGAAACAACAAATT-TTTCGGAAGTATTTTTGA
1 TAATATTAAGTAGACCGTCTATTCCCGCTAACCGAAACAACAAATTCTTT-GGAAGCATTTTTGA
** * * *
2173 TA-CTTGAAACATTAAATTTAGTTTTCGAGTTCTTCATGAAAGTACTTGTAGATCATGGAACAAT
65 TACCTTG-AACATTAAATTTAGTTTTCGAGCCCCTAATGAAAG---TTGTAGATCATGGAACAAC
* * ** * *
2237 CTTTTAATAGACACTTAAATCACTTTGATCGGATAACCGGAG-AGAAAATAATA
126 CTTTCAAGAGACACTTAAATCACTTCAATCAGACAACCGGAGCA-AAAATAATA
* *
2290 TAATGTTAAATAGACCGT
1 TAATATTAAGTAGACCGT
2308 TTAGTCAAAC
Statistics
Matches: 161, Mismatches: 32, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
177 7 0.04
178 82 0.51
180 1 0.01
181 71 0.44
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Consensus pattern (178 bp):
TAATATTAAGTAGACCGTCTATTCCCGCTAACCGAAACAACAAATTCTTTGGAAGCATTTTTGAT
ACCTTGAACATTAAATTTAGTTTTCGAGCCCCTAATGAAAGTTGTAGATCATGGAACAACCTTTC
AAGAGACACTTAAATCACTTCAATCAGACAACCGGAGCAAAAATAATA
Found at i:2727 original size:14 final size:14
Alignment explanation
Indices: 2704--2756 Score: 70
Period size: 14 Copynumber: 3.7 Consensus size: 14
2694 CAACTCAAAC
*
2704 TAAAATAAAATTGA
1 TAAAAAAAAATTGA
2718 TAAAAAAAAATTGA
1 TAAAAAAAAATTGA
* *
2732 TCTAAAAAGAATTGA
1 T-AAAAAAAAATTGA
2747 TAAAAAAAAA
1 TAAAAAAAAA
2757 AAACTATCTA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
14 21 0.64
15 12 0.36
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.23
Consensus pattern (14 bp):
TAAAAAAAAATTGA
Found at i:2738 original size:15 final size:14
Alignment explanation
Indices: 2704--2755 Score: 61
Period size: 15 Copynumber: 3.6 Consensus size: 14
2694 CAACTCAAAC
2704 TAAAATAAAATTGAT
1 TAAAA-AAAATTGAT
*
2719 AAAAAAAAATTGAT
1 TAAAAAAAATTGAT
*
2733 CTAAAAAGAATTGA-
1 -TAAAAAAAATTGAT
2747 TAAAAAAAA
1 TAAAAAAAA
2756 AAAACTATCT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
13 8 0.25
14 9 0.28
15 15 0.47
ACGTcount: A:0.67, C:0.02, G:0.08, T:0.23
Consensus pattern (14 bp):
TAAAAAAAATTGAT
Found at i:13744 original size:13 final size:13
Alignment explanation
Indices: 13724--13769 Score: 56
Period size: 13 Copynumber: 3.3 Consensus size: 13
13714 ATCATGATAT
13724 AGTATAGACTCAA
1 AGTATAGACTCAA
*
13737 ATTATAGACTCAAAA
1 AGTATAGACTC--AA
13752 AGTATAGACTCAA
1 AGTATAGACTCAA
13765 TAGTA
1 -AGTA
13770 CGTACGTAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
13 12 0.43
14 4 0.14
15 12 0.43
ACGTcount: A:0.48, C:0.13, G:0.13, T:0.26
Consensus pattern (13 bp):
AGTATAGACTCAA
Found at i:13759 original size:15 final size:15
Alignment explanation
Indices: 13724--13764 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
13714 ATCATGATAT
13724 AGTATAGACTC--AA
1 AGTATAGACTCAAAA
*
13737 ATTATAGACTCAAAA
1 AGTATAGACTCAAAA
13752 AGTATAGACTCAA
1 AGTATAGACTCAA
13765 TAGTACGTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 10 0.42
15 14 0.58
ACGTcount: A:0.49, C:0.15, G:0.12, T:0.24
Consensus pattern (15 bp):
AGTATAGACTCAAAA
Found at i:14903 original size:13 final size:14
Alignment explanation
Indices: 14867--14909 Score: 52
Period size: 13 Copynumber: 3.1 Consensus size: 14
14857 TTTTGATCCG
14867 TATTATATATAATA
1 TATTATATATAATA
* *
14881 TA-TATCTATATTA
1 TATTATATATAATA
14894 TAATTATATATAATA
1 T-ATTATATATAATA
14909 T
1 T
14910 GATGTGGTTG
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
13 10 0.43
14 3 0.13
15 10 0.43
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (14 bp):
TATTATATATAATA
Found at i:20306 original size:21 final size:21
Alignment explanation
Indices: 20280--20324 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
20270 CTACCTTGAA
20280 AAATGACTATACTATAGAGAT
1 AAATGACTATACTATAGAGAT
20301 AAATGACTATACTATAGAGAT
1 AAATGACTATACTATAGAGAT
20322 AAA
1 AAA
20325 ACCTTACAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.51, C:0.09, G:0.13, T:0.27
Consensus pattern (21 bp):
AAATGACTATACTATAGAGAT
Found at i:22599 original size:16 final size:16
Alignment explanation
Indices: 22578--22608 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
22568 AACCATGCAT
22578 TGCATAGTGCATATAG
1 TGCATAGTGCATATAG
22594 TGCATAGTGCATATA
1 TGCATAGTGCATATA
22609 TACCAGACGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.13, G:0.23, T:0.32
Consensus pattern (16 bp):
TGCATAGTGCATATAG
Found at i:26913 original size:56 final size:57
Alignment explanation
Indices: 26813--26921 Score: 152
Period size: 56 Copynumber: 1.9 Consensus size: 57
26803 GGGCTCAAAG
* *
26813 AAAAAAAAATGCTTAAATCAGGGCCCAACGTTTGTGAAAATGCTCAAATAAGTGCTC
1 AAAAAAAAATGCTCAAATAAGGGCCCAACGTTTGTGAAAATGCTCAAATAAGTGCTC
*
26870 AAAAAAAAA-GCTCAAATAAGGGTCCAAC-TTT-TAGAAAATTGCTCAAATAAGT
1 AAAAAAAAATGCTCAAATAAGGGCCCAACGTTTGT-GAAAA-TGCTCAAATAAGT
26922 CTCTGCCGTC
Statistics
Matches: 47, Mismatches: 3, Indels: 5
0.85 0.05 0.09
Matches are distributed among these distances:
54 1 0.02
55 8 0.17
56 29 0.62
57 9 0.19
ACGTcount: A:0.46, C:0.16, G:0.16, T:0.23
Consensus pattern (57 bp):
AAAAAAAAATGCTCAAATAAGGGCCCAACGTTTGTGAAAATGCTCAAATAAGTGCTC
Found at i:26969 original size:22 final size:22
Alignment explanation
Indices: 26941--26992 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
26931 CACTGTGTGG
26941 TTATCAAAATTCCATAAT-AAGA
1 TTATCAAAATTCCAT-ATGAAGA
* *
26963 TTATCAAAATTTCATATGGAGA
1 TTATCAAAATTCCATATGAAGA
26985 TTATCAAA
1 TTATCAAA
26993 TTTTCATTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
21 2 0.07
22 25 0.93
ACGTcount: A:0.46, C:0.12, G:0.08, T:0.35
Consensus pattern (22 bp):
TTATCAAAATTCCATATGAAGA
Found at i:28836 original size:2 final size:2
Alignment explanation
Indices: 28829--28864 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
28819 TGGGTACTAG
28829 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
28865 TGAAATGGTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:29606 original size:40 final size:35
Alignment explanation
Indices: 29524--29612 Score: 178
Period size: 35 Copynumber: 2.5 Consensus size: 35
29514 AAAGATACAC
29524 AACTCTGTTCTGTTCTTTTTATTTTTTTTGGTAGA
1 AACTCTGTTCTGTTCTTTTTATTTTTTTTGGTAGA
29559 AACTCTGTTCTGTTCTTTTTATTTTTTTTGGTAGA
1 AACTCTGTTCTGTTCTTTTTATTTTTTTTGGTAGA
29594 AACTCTGTTCTGTTCTTTT
1 AACTCTGTTCTGTTCTTTT
29613 GTTTTACTAC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 54 1.00
ACGTcount: A:0.13, C:0.13, G:0.13, T:0.60
Consensus pattern (35 bp):
AACTCTGTTCTGTTCTTTTTATTTTTTTTGGTAGA
Found at i:32893 original size:6 final size:6
Alignment explanation
Indices: 32882--32909 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
32872 TGTTGTGGTG
32882 AAGAGC AAGAGC AAGAGC AAGAGC AAGA
1 AAGAGC AAGAGC AAGAGC AAGAGC AAGA
32910 CTCAAGACTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.54, C:0.14, G:0.32, T:0.00
Consensus pattern (6 bp):
AAGAGC
Found at i:38489 original size:14 final size:14
Alignment explanation
Indices: 38467--38508 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
38457 ACCTCCAGCG
*
38467 CCAAACCCAACAAT
1 CCAATCCCAACAAT
38481 CCAATCCCAACCAAT
1 CCAATCCCAA-CAAT
*
38496 CC-ATCCAAACAAT
1 CCAATCCCAACAAT
38509 GCGGCAACTG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 4 0.16
14 15 0.60
15 6 0.24
ACGTcount: A:0.45, C:0.43, G:0.00, T:0.12
Consensus pattern (14 bp):
CCAATCCCAACAAT
Found at i:40118 original size:15 final size:15
Alignment explanation
Indices: 40098--40127 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
40088 ATAAGATTAT
40098 GACAAGTCAAATTTC
1 GACAAGTCAAATTTC
*
40113 GACAAGTCAGATTTC
1 GACAAGTCAAATTTC
40128 TTCTTAAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.27
Consensus pattern (15 bp):
GACAAGTCAAATTTC
Found at i:41553 original size:334 final size:330
Alignment explanation
Indices: 40468--42750 Score: 2153
Period size: 334 Copynumber: 6.9 Consensus size: 330
40458 AAACTGTGAT
* * *
40468 CGATTTCAGCTAAAATTTTCCAAAAATTGACTCGAAATATTTTTCCTCAATTTTTGG-CAATAAT
1 CGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAATATTTTTCCTCAATTTTTGGCCAA-AAT
* * * *
40532 ACTCGTAAAAAATATATAATTCAAC-ACAAATA-TTT-AAGGGCTTTTCAA-ACTTCTAATATCG
65 ACTCATAAAAAATATATAATTCAACGCCAAAAAGTTTGAAGGGCTTTT-AACGCTTCTAATATCG
* * *
40593 TTTTTCCA-ATTTTATTTCCT-AATTAATTTCTCATTAAATCGAAACAAGATTCAGATACTCGTA
129 -TGTTCCATA-TTT-TTTCCTAAATTAATTTCTGATTAAATCGAAACAAGATTCAGATGCTCGTA
* * * * * * * ** *
40656 AAAATATATCCTTAAATCCAATGTGACTGAGGTTCGATTAGATGAATATTCATATTTCAAAGAGT
191 AAAACAAATCCTCAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTC-AAGACT
* ** * *
40721 CTCGGTGCGAAAAATCATGAAAAATTGTGCAAAACTGAGCCGATGCCCCAAAGCACGCGTTTTTA
255 CTC-G-GC-----A-C--CAAAAATCATGCAAAACTGAGCCG-GGCCCCGAA--ACGCGTTTTTA
** *** *
40786 GCC----A--GTTTTTCCTCTA-A
307 GCCAAAAACCGTGATGGTTATACA
** * *** *** * * * * *
40803 ATATTTTGAGC---CGGTGCCCCAAAACTGACCAGGAATATTTTTCCTCAATTTTTGACCAAAAT
1 CGATTTCG-GCTAAAATTTTGCAAAAATTGACCCGAAATATTTTTCCTCAATTTTTGGCCAAAAT
* * * *
40865 ACTCTTAAAAAAATATATAATTCAATGCCAAAAAGTTTGAAGGGATTTTAACGCTACTAATATCG
65 ACTCAT-AAAAAATATATAATTCAACGCCAAAAAGTTTGAAGGGCTTTTAACGCTTCTAATATCG
* * *
40930 TGTTCCCTATTTTTTCCTAAATTAATTTCTGATTAAATCGAAACAAAATTTAGATGCTCGTAAAA
129 TGTTCCATATTTTTTCCTAAATTAATTTCTGATTAAATCGAAACAAGATTCAGATGCTCGTAAAA
** * * *
40995 ACAAATCCTCAAATCTTATGTGGCTGAGAATTGGGTAGATGAATATAGATATTTCAACAACTCTC
194 ACAAATCCTCAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAA-GACTCTC
* * * *
41060 GGCACCAAAAATCATGCAAAACTAAACCGGTGCCCCGAAACACGCTTTTAGCCAAAAACCGTGAT
258 GGCACCAAAAATCATGCAAAACTGAGCCGG-GCCCCGAAACGCGTTTTTAGCCAAAAACCGTGA-
*
41125 TGGTTGGTACA
321 TGGTT-ATACA
41136 CGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAATATTTTTCCTCAATTTTTGGCCAAAATA
1 CGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAATATTTTTCCTCAATTTTTGGCCAAAATA
* * * * * * *
41201 CTCTTAAGAAACATATAATTCAATGCCAAAAAGTTTGAAGGGGTTTTAACGTTTCTAATATTGTT
66 CTCATAAAAAATATATAATTCAACGCCAAAAAGTTTGAAGGGCTTTTAACGCTTCTAATATCG-T
* * * * **
41266 TTTCCAATGTTTTTTCCT-AATTATTTTCTGATTAAATCGAAACAAAATTCAGAAACTCGTAAAA
130 GTTCC-ATATTTTTTCCTAAATTAATTTCTGATTAAATCGAAACAAGATTCAGATGCTCGTAAAA
* * * * * * *
41330 ACATATCCTTAAATCCAATGTGGCTGAGACTTGATTTGATGAATATAGTTATTTCAAGGAGT-TC
194 ACAAATCCTCAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAA-GACTCT-
* ** * * * *
41394 CGGCGCCAAAAAAGAAGAAAAACTGAGCCGCGGCCCCGGAACGCGTTTTTAGCCAAAAACTGTGA
257 CGGCACCAAAAATCATGCAAAACTGAGCCG-GGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGA
41459 TGGTTACTACA
321 TGGTTA-TACA
* * * * *
41470 C-AGTTTCGACTAAAATTTTCCAAAAATTGACCTGAAATATTTTACCTCAATTTTTGTCCAAAAT
1 CGA-TTTCGGCTAAAATTTTGCAAAAATTGACCCGAAATATTTTTCCTCAATTTTTGGCCAAAAT
* * *
41534 ACTCATCAAAAATATATAATTCAACGCAAAAAAGTTTAAAGGGCTTTTCAA-GCTTCTAATATCG
65 ACTCATAAAAAATATATAATTCAACGCCAAAAAGTTTGAAGGGCTTTT-AACGCTTCTAATATC-
* * * * *
41598 GTTTTCCAAATTTTTTCATAAATTAATTTCTGATTAAATCGAAATAAGATTCAGATTCTCGTAAA
128 GTGTTCCATATTTTTTCCTAAATTAATTTCTGATTAAATCGAAACAAGATTCAGATGCTCGTAAA
* * * * * * * * *
41663 ATCATATCCTTAAATCCAATGTGGCTGGGATTTGATTAGTTAAATATATATATGTCAAGGACTCT
193 AACAAATCCTCAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAA-GACTCT
* * * * * * *
41728 CGACGCCAAAAATCAAGCAAAATTGAGTCGTGGCCCTGGAACGCGTTTTTAGCCAAAAA-C-TG-
257 CGGCACCAAAAATCATGCAAAACTGAGCCG-GGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGA
*
41790 T-G-AATACA
321 TGGTTATACA
* * ** * * * * * *
41798 TGGTTTCCACTATAATTTTCCAAAAATTGACCTGGAATATTTTTCGTCAATTTTTGACCAAAATA
1 CGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAATATTTTTCCTCAATTTTTGGCCAAAATA
* * *
41863 CTAAT-AAAAATATATAGTTCAACACCAAAAA-TATTGAAGGGCTTTTAACGCTTCTAATATCGT
66 CTCATAAAAAATATATAATTCAACGCCAAAAAGT-TTGAAGGGCTTTTAACGCTTCTAATATCGT
* *** *
41926 GTTCCCTATTTTTAAGTAAATTAATTTATGATTAAATCGAAACAAGATTCAGATGCTCGTAAAAA
130 GTTCCATATTTTTTCCTAAATTAATTTCTGATTAAATCGAAACAAGATTCAGATGCTCGTAAAAA
* *
41991 CAAATCCTCAAATCTAATGTGGTTGAGAATTT-GTTAGATGAATATAGATATTAT-AACGACTCT
195 CAAATCCTCAAATCCAATGTGGCTGAG-ATTTGGTTAGATGAATATAGATATT-TCAA-GACTCT
* * * *
42054 TGGCTCCAAAAATCATGCAAAACTGGGTCGGTGCCCCGAAACGCGTTTTT-GCCAAAAACCGTGA
257 CGGCACCAAAAATCATGCAAAACTGAGCCGG-GCCCCGAAACGCGTTTTTAGCCAAAAACCGTGA
42118 T-G--AT-CA
321 TGGTTATACA
* **
42124 CGATTTCGGCTAAAATTTTGCAAAAACTGACCCGAAATATTTTTCCTCAATTTTTGGCCATGATA
1 CGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAATATTTTTCCTCAATTTTTGGCCAAAATA
* * * *
42189 CTCATAAAAAATATAAAATTCAACACCAAAAAGTTTGAAGGGATTTTAACGCTACTAATATCGTG
66 CTCATAAAAAATATATAATTCAACGCCAAAAAGTTTGAAGGGCTTTTAACGCTTCTAATATCGTG
* * * *
42254 TTCCCTATTTTTTCCTAAATTAGTTT-TAGATTAAATTGAAACAAGATTCAGATGCTCCTAAAAA
131 TTCCATATTTTTTCCTAAATTAATTTCT-GATTAAATCGAAACAAGATTCAGATGCTCGTAAAAA
** * * * *
42318 CAAATCCTCAAATCTTATGTGGCTGAGAATTGGGTAGATGAATATAGATATTTTAACAACTCTCG
195 CAAATCCTCAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAA-GACTCTCG
* * * *
42383 GCACCAAAAATCATGCAATACTGAGCCTGTGCCCCGAAACGCGTTCTTAACCAAAAACCGTGATG
259 GCACCAAAAATCATGCAAAACTGAGCC-GGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATG
*
42448 GTTAGAACA
323 GTTA-TACA
* * *
42457 CGATTTCGGCTAAAATTTTGCAAAAATTGACCCAAAATATTTTTCCTCAATTTTGGGCCGAAATA
1 CGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAATATTTTTCCTCAATTTTTGGCCAAAATA
* * * * *
42522 CTCTTAAAAAGATATATAATTCAAAGCCAAAAAGTTTGAAGGACTTTTAACGTTTCTAATATTGT
66 CTCATAAAAA-ATATATAATTCAACGCCAAAAAGTTTGAAGGGCTTTTAACGCTTCTAATATCG-
* * ** * *
42587 TTTTCCA-AATTTTTCCTAAATTAAAATCTGATTAAATCAAAACAAGATTTAGATGCTCGTAAAA
129 TGTTCCATATTTTTTCCTAAATTAATTTCTGATTAAATCGAAACAAGATTCAGATGCTCGTAAAA
* *
42651 ACAAATCCT-AAATTCCAATATGG-TGGAGATTTGGTTAGATGAATATAGATATTTTAACGACTC
194 ACAAATCCTCAAA-TCCAATGTGGCT-GAGATTTGGTTAGATGAATATAGATATTTCAA-GACTC
* * * *
42714 TCAGC-GCATAAAATCATGCAAAATTGGGCCGGTGCCC
256 TCGGCACCA-AAAATCATGCAAAACTGAGCCGG-GCCC
42751 ACACGATTTC
Statistics
Matches: 1618, Mismatches: 269, Indels: 123
0.80 0.13 0.06
Matches are distributed among these distances:
324 12 0.01
325 9 0.01
326 235 0.15
327 258 0.16
328 84 0.05
329 3 0.00
330 3 0.00
331 4 0.00
332 6 0.00
333 134 0.08
334 511 0.32
335 223 0.14
336 115 0.07
337 21 0.01
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.32
Consensus pattern (330 bp):
CGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAATATTTTTCCTCAATTTTTGGCCAAAATA
CTCATAAAAAATATATAATTCAACGCCAAAAAGTTTGAAGGGCTTTTAACGCTTCTAATATCGTG
TTCCATATTTTTTCCTAAATTAATTTCTGATTAAATCGAAACAAGATTCAGATGCTCGTAAAAAC
AAATCCTCAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGACTCTCGGC
ACCAAAAATCATGCAAAACTGAGCCGGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTT
ATACA
Done.