Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01012366.1 Corchorus olitorius cultivar O-4 contig12399, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 159568
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Found at i:1020 original size:25 final size:25
Alignment explanation
Indices: 992--1039 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
982 CATGCGATAG
992 CACATCTCCAAC-ATCATCCAAATAA
1 CACATCTCC-ACTATCATCCAAATAA
* *
1017 CACATTTCCACTGTCATCCAAAT
1 CACATCTCCACTATCATCCAAAT
1040 TGTCGATTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 2 0.10
25 18 0.90
ACGTcount: A:0.38, C:0.35, G:0.02, T:0.25
Consensus pattern (25 bp):
CACATCTCCACTATCATCCAAATAA
Found at i:4706 original size:6 final size:6
Alignment explanation
Indices: 4695--4732 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
4685 AATTAATTAT
4695 ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATG-AG ATG
1 ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATG
4733 GAGTGAATTA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 5 0.16
6 27 0.84
ACGTcount: A:0.47, C:0.00, G:0.34, T:0.18
Consensus pattern (6 bp):
ATGAAG
Found at i:5314 original size:18 final size:18
Alignment explanation
Indices: 5290--5332 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
5280 CTGAAGGGGA
5290 AGCAGAAGCTTCAGGTGC
1 AGCAGAAGCTTCAGGTGC
* *
5308 AGGAGAAGCTTCTGGTGC
1 AGCAGAAGCTTCAGGTGC
5326 AGCAGAA
1 AGCAGAA
5333 ATGTGAGATA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.30, C:0.19, G:0.35, T:0.16
Consensus pattern (18 bp):
AGCAGAAGCTTCAGGTGC
Found at i:7009 original size:31 final size:31
Alignment explanation
Indices: 6971--7031 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
6961 GGTATTAGGC
6971 TATTAGCCTTCGTTGGTAAATAACAGTTTGG
1 TATTAGCCTTCGTTGGTAAATAACAGTTTGG
*
7002 TATTAGCCTTCGTTGGTAAATGACAGTTTG
1 TATTAGCCTTCGTTGGTAAATAACAGTTTG
7032 TTTGTAGGTA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.13, G:0.23, T:0.39
Consensus pattern (31 bp):
TATTAGCCTTCGTTGGTAAATAACAGTTTGG
Found at i:7059 original size:16 final size:16
Alignment explanation
Indices: 7038--7073 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
7028 TTTGTTTGTA
*
7038 GGTATTAGTCTTCGTT
1 GGTATTAGCCTTCGTT
*
7054 GGTATTAGCCTTTGTT
1 GGTATTAGCCTTCGTT
7070 GGTA
1 GGTA
7074 AATGACAGTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.14, C:0.11, G:0.28, T:0.47
Consensus pattern (16 bp):
GGTATTAGCCTTCGTT
Found at i:8263 original size:6 final size:6
Alignment explanation
Indices: 8252--8283 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
8242 TTGCTGCTGA
8252 TCCTCT TCCTCT TCCTCT TCCTCT TCCTCT TC
1 TCCTCT TCCTCT TCCTCT TCCTCT TCCTCT TC
8284 TTGATGATGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (6 bp):
TCCTCT
Found at i:18099 original size:36 final size:36
Alignment explanation
Indices: 18052--18125 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
18042 AAGCATAAAC
18052 ATGAACAGAATAACTTTGGCATTGAAAAACAAGTAA
1 ATGAACAGAATAACTTTGGCATTGAAAAACAAGTAA
18088 ATGAACAGAATAACTTTGGCATTGAAAAACAAGTAA
1 ATGAACAGAATAACTTTGGCATTGAAAAACAAGTAA
18124 AT
1 AT
18126 AGTTATATCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.50, C:0.11, G:0.16, T:0.23
Consensus pattern (36 bp):
ATGAACAGAATAACTTTGGCATTGAAAAACAAGTAA
Found at i:25085 original size:11 final size:11
Alignment explanation
Indices: 25061--25104 Score: 56
Period size: 11 Copynumber: 4.1 Consensus size: 11
25051 ATTGCTACTC
25061 TTATTGTATT-T
1 TTATT-TATTAT
25072 TTATTTATTAT
1 TTATTTATTAT
25083 TTATTTA-TAT
1 TTATTTATTAT
*
25093 TTATTAATTAT
1 TTATTTATTAT
25104 T
1 T
25105 ATATATATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
10 13 0.43
11 17 0.57
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.70
Consensus pattern (11 bp):
TTATTTATTAT
Found at i:25093 original size:17 final size:17
Alignment explanation
Indices: 25061--25110 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 17
25051 ATTGCTACTC
*
25061 TTATTGTATTTTTATTTA
1 TTATT-TATTTATATTTA
25079 TTATTTATTTATATTTA
1 TTATTTATTTATATTTA
*
25096 TTAATTATTATATAT
1 TTATTTATT-TATAT
25111 ATATATACAG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
17 19 0.66
18 10 0.34
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (17 bp):
TTATTTATTTATATTTA
Found at i:25115 original size:24 final size:23
Alignment explanation
Indices: 25067--25116 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
25057 ACTCTTATTG
* * *
25067 TATTTTTATTTATTATTTATTTA
1 TATTTTTAATTATTATATATATA
25090 TATTTATTAATTATTATATATATA
1 TATTT-TTAATTATTATATATATA
25114 TAT
1 TAT
25117 ACAGTAGTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 5 0.22
24 18 0.78
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (23 bp):
TATTTTTAATTATTATATATATA
Found at i:36916 original size:5 final size:5
Alignment explanation
Indices: 36906--36930 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
36896 CCATAAATGC
36906 TCCAA TCCAA TCCAA TCCAA TCCAA
1 TCCAA TCCAA TCCAA TCCAA TCCAA
36931 GGGTCAAGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.40, G:0.00, T:0.20
Consensus pattern (5 bp):
TCCAA
Found at i:60314 original size:27 final size:28
Alignment explanation
Indices: 60284--60339 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
60274 ACCTTGGTGC
60284 TCTAAAAAATCTG-AAAAAATGGTTCTT
1 TCTAAAAAATCTGAAAAAAATGGTTCTT
60311 TCTAAAAAATCTGAAAAAAATGGTTCTT
1 TCTAAAAAATCTGAAAAAAATGGTTCTT
60339 T
1 T
60340 GGAAAGAAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 13 0.46
28 15 0.54
ACGTcount: A:0.45, C:0.11, G:0.11, T:0.34
Consensus pattern (28 bp):
TCTAAAAAATCTGAAAAAAATGGTTCTT
Found at i:63642 original size:17 final size:16
Alignment explanation
Indices: 63616--63648 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
63606 CCTCCGTTTC
63616 TTCTTCTTTTCTTTTTT
1 TTCTTCTTTT-TTTTTT
63633 TTCTT-TTTTTTTTTT
1 TTCTTCTTTTTTTTTT
63648 T
1 T
63649 AAAGTCAAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 4 0.25
17 5 0.31
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (16 bp):
TTCTTCTTTTTTTTTT
Found at i:63648 original size:14 final size:14
Alignment explanation
Indices: 63619--63647 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
63609 CCGTTTCTTC
63619 TTCTTTTCTTTTTT
1 TTCTTTTCTTTTTT
63633 TTCTTTT-TTTTTT
1 TTCTTTTCTTTTTT
63646 TT
1 TT
63648 TAAAGTCAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (14 bp):
TTCTTTTCTTTTTT
Found at i:68945 original size:30 final size:30
Alignment explanation
Indices: 68909--68966 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
68899 TAGTGATTGG
* *
68909 GATTCTACTCCAGCTACTTCTAAGGATCCT
1 GATTCTACTCCAGCTACTCCGAAGGATCCT
68939 GATTCTACTCCAGCTACTCCGAAGGATC
1 GATTCTACTCCAGCTACTCCGAAGGATC
68967 ATATATATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.29
Consensus pattern (30 bp):
GATTCTACTCCAGCTACTCCGAAGGATCCT
Found at i:71439 original size:12 final size:12
Alignment explanation
Indices: 71422--71446 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
71412 CTAAAGCAAG
71422 TCAACTTTACAA
1 TCAACTTTACAA
71434 TCAACTTTACAA
1 TCAACTTTACAA
71446 T
1 T
71447 TGGATGGTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.24, G:0.00, T:0.36
Consensus pattern (12 bp):
TCAACTTTACAA
Found at i:87187 original size:32 final size:32
Alignment explanation
Indices: 87149--87226 Score: 156
Period size: 32 Copynumber: 2.4 Consensus size: 32
87139 GATCCAAATT
87149 AAGACAAGATCTCTATTTAAAAACCTTACCCA
1 AAGACAAGATCTCTATTTAAAAACCTTACCCA
87181 AAGACAAGATCTCTATTTAAAAACCTTACCCA
1 AAGACAAGATCTCTATTTAAAAACCTTACCCA
87213 AAGACAAGATCTCT
1 AAGACAAGATCTCT
87227 CTATTATTGT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 46 1.00
ACGTcount: A:0.44, C:0.24, G:0.08, T:0.24
Consensus pattern (32 bp):
AAGACAAGATCTCTATTTAAAAACCTTACCCA
Found at i:88145 original size:7 final size:7
Alignment explanation
Indices: 88133--88161 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
88123 GATGACTCTG
88133 ACTCACA
1 ACTCACA
88140 ACTCACA
1 ACTCACA
88147 ACTCACA
1 ACTCACA
88154 ACTCACA
1 ACTCACA
88161 A
1 A
88162 AGCTAAAGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.45, C:0.41, G:0.00, T:0.14
Consensus pattern (7 bp):
ACTCACA
Found at i:90347 original size:3 final size:3
Alignment explanation
Indices: 90341--90366 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
90331 ATCACCTCCT
90341 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
90367 TGGTGTAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:91518 original size:13 final size:13
Alignment explanation
Indices: 91500--91525 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
91490 TTTTCTCTCA
91500 TCTTTCTTTCTTT
1 TCTTTCTTTCTTT
91513 TCTTTCTTTCTTT
1 TCTTTCTTTCTTT
91526 CTTCCCAACG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (13 bp):
TCTTTCTTTCTTT
Found at i:94919 original size:24 final size:24
Alignment explanation
Indices: 94887--94934 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
94877 ATTCTCTAAG
*
94887 TAAGATTGAGCTGGATAATCGTGT
1 TAAGATTGAACTGGATAATCGTGT
*
94911 TAAGATTGAATTGGATAATCGTGT
1 TAAGATTGAACTGGATAATCGTGT
94935 GGTGCGCGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.31, C:0.06, G:0.27, T:0.35
Consensus pattern (24 bp):
TAAGATTGAACTGGATAATCGTGT
Found at i:100665 original size:31 final size:31
Alignment explanation
Indices: 100601--100773 Score: 177
Period size: 39 Copynumber: 5.1 Consensus size: 31
100591 AAGCATAGAT
100601 TCCTCTGTTTCTTTTTATCTTAAACT-CAAC
1 TCCTCTGTTTCTTTTTATCTTAAACTCCAAC
100631 TCCTCTGTTTCTTTTTATCTTAAACTCCAACTCC
1 TCCTCTGTTTCTTTTTATCTTAAACTCCAA---C
*
100665 TCGATTGCTCTGTTTTTTTTTCATCTTAAACTCCAAC
1 TC-----CTCTGTTTCTTTTT-ATCTTAAACTCCAAC
100702 TCCTCTGTTTCTTTTTATCTTAAACTCCAACTCC
1 TCCTCTGTTTCTTTTTATCTTAAACTCCAA---C
100736 TCGATTGCTCTGTTTCTTTTTATCTTAAACTCCAAC
1 TC-----CTCTGTTTCTTTTTATCTTAAACTCCAAC
100772 TC
1 TC
100774 TGTTTAGTAG
Statistics
Matches: 123, Mismatches: 2, Indels: 30
0.79 0.01 0.19
Matches are distributed among these distances:
30 26 0.21
31 17 0.14
32 13 0.11
34 6 0.05
36 3 0.02
37 3 0.02
39 41 0.33
40 14 0.11
ACGTcount: A:0.18, C:0.28, G:0.05, T:0.48
Consensus pattern (31 bp):
TCCTCTGTTTCTTTTTATCTTAAACTCCAAC
Found at i:100676 original size:39 final size:39
Alignment explanation
Indices: 100633--100773 Score: 208
Period size: 39 Copynumber: 3.8 Consensus size: 39
100623 AACTCAACTC
100633 CTCTGTTTCTTTTTATCTTAAACTCCAACTCCTCGATTG
1 CTCTGTTTCTTTTTATCTTAAACTCCAACTCCTCGATTG
*
100672 CTCTGTTTTTTTTTCATCTTAAACTCCAA---CTC-----
1 CTCTGTTTCTTTTT-ATCTTAAACTCCAACTCCTCGATTG
100704 CTCTGTTTCTTTTTATCTTAAACTCCAACTCCTCGATTG
1 CTCTGTTTCTTTTTATCTTAAACTCCAACTCCTCGATTG
100743 CTCTGTTTCTTTTTATCTTAAACTCCAACTC
1 CTCTGTTTCTTTTTATCTTAAACTCCAACTC
100774 TGTTTAGTAG
Statistics
Matches: 91, Mismatches: 2, Indels: 18
0.82 0.02 0.16
Matches are distributed among these distances:
31 14 0.15
32 13 0.14
34 3 0.03
37 3 0.03
39 44 0.48
40 14 0.15
ACGTcount: A:0.18, C:0.28, G:0.06, T:0.48
Consensus pattern (39 bp):
CTCTGTTTCTTTTTATCTTAAACTCCAACTCCTCGATTG
Found at i:100717 original size:71 final size:70
Alignment explanation
Indices: 100598--100773 Score: 318
Period size: 71 Copynumber: 2.5 Consensus size: 70
100588 AGCAAGCATA
*
100598 GATTCCTCTGTTTCTTTTTATCTTAAACT-CAACTCCTCTGTTTCTTTTTATCTTAAACTCCAAC
1 GATTGCTCTGTTTCTTTTTATCTTAAACTCCAACTCCTCTGTTTCTTTTTATCTTAAACTCCAAC
100662 TCCTC
66 TCCTC
*
100667 GATTGCTCTGTTTTTTTTTCATCTTAAACTCCAACTCCTCTGTTTCTTTTTATCTTAAACTCCAA
1 GATTGCTCTGTTTCTTTTT-ATCTTAAACTCCAACTCCTCTGTTTCTTTTTATCTTAAACTCCAA
100732 CTCCTC
65 CTCCTC
100738 GATTGCTCTGTTTCTTTTTATCTTAAACTCCAACTC
1 GATTGCTCTGTTTCTTTTTATCTTAAACTCCAACTC
100774 TGTTTAGTAG
Statistics
Matches: 102, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
69 17 0.17
70 27 0.26
71 58 0.57
ACGTcount: A:0.19, C:0.28, G:0.06, T:0.48
Consensus pattern (70 bp):
GATTGCTCTGTTTCTTTTTATCTTAAACTCCAACTCCTCTGTTTCTTTTTATCTTAAACTCCAAC
TCCTC
Found at i:102027 original size:15 final size:15
Alignment explanation
Indices: 102007--102036 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
101997 ATATTGGAAG
102007 CATACTATTATATAT
1 CATACTATTATATAT
102022 CATACTATTATATAT
1 CATACTATTATATAT
102037 AATATGGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.13, G:0.00, T:0.47
Consensus pattern (15 bp):
CATACTATTATATAT
Found at i:105244 original size:14 final size:14
Alignment explanation
Indices: 105225--105253 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
105215 GTCAAACAAA
105225 AATCTGCTCTTCTG
1 AATCTGCTCTTCTG
105239 AATCTGCTCTTCTG
1 AATCTGCTCTTCTG
105253 A
1 A
105254 GCCTCTCCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.28, G:0.14, T:0.41
Consensus pattern (14 bp):
AATCTGCTCTTCTG
Found at i:107853 original size:24 final size:24
Alignment explanation
Indices: 107826--107874 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
107816 TAAGAATCAA
107826 TGCTACAGGAGGCGGAGAGAGAGG
1 TGCTACAGGAGGCGGAGAGAGAGG
*
107850 TGCTATAGGAGGCGGAGAGAGAGG
1 TGCTACAGGAGGCGGAGAGAGAGG
107874 T
1 T
107875 TGTGAATGTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.10, G:0.49, T:0.12
Consensus pattern (24 bp):
TGCTACAGGAGGCGGAGAGAGAGG
Found at i:107948 original size:25 final size:24
Alignment explanation
Indices: 107912--107961 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 24
107902 TGAGATTTTG
107912 GAGGAAAACTAATGAAGAAACAAA
1 GAGGAAAACTAATGAAGAAACAAA
107936 GAGGAAAAACTAATGAAGAAACAAA
1 GAGG-AAAACTAATGAAGAAACAAA
107961 G
1 G
107962 TTCAATCTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 4 0.16
25 21 0.84
ACGTcount: A:0.62, C:0.08, G:0.22, T:0.08
Consensus pattern (24 bp):
GAGGAAAACTAATGAAGAAACAAA
Found at i:121908 original size:30 final size:29
Alignment explanation
Indices: 121848--121910 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 29
121838 AGATATGAAA
* *
121848 AGCAATCAACATAGTTGGTATACACTAAT
1 AGCAATCAACATAGTTGGTAGACACCAAT
*
121877 AGCAATCAAACATAGTTGGTAGATACCAAT
1 AGCAATC-AACATAGTTGGTAGACACCAAT
121907 AGCA
1 AGCA
121911 TAACATCTAG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 7 0.23
30 23 0.77
ACGTcount: A:0.43, C:0.17, G:0.16, T:0.24
Consensus pattern (29 bp):
AGCAATCAACATAGTTGGTAGACACCAAT
Found at i:126100 original size:13 final size:13
Alignment explanation
Indices: 126082--126109 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
126072 AAATAAATAT
126082 TTATCTATACTAA
1 TTATCTATACTAA
126095 TTATCTATACTAA
1 TTATCTATACTAA
126108 TT
1 TT
126110 GATTCGGAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.14, G:0.00, T:0.50
Consensus pattern (13 bp):
TTATCTATACTAA
Found at i:133659 original size:62 final size:62
Alignment explanation
Indices: 133562--133736 Score: 314
Period size: 62 Copynumber: 2.8 Consensus size: 62
133552 ATAGAGGTTT
*
133562 CAATTATTTTCATTGTAGTATGAATTCATTTTGTTTCCTTTAAAATTAGAATGTAATTCTTC
1 CAATTATTTTCATTGTAGTATGAATTCATTTTGTTTCCTTTAAAATTAGAATGTAATTCTTA
*
133624 CAATTATTTTCATTGTAGTATGAATTCATTTTGTTTCCTTCAAAATTAGAATGTAATTCTTA
1 CAATTATTTTCATTGTAGTATGAATTCATTTTGTTTCCTTTAAAATTAGAATGTAATTCTTA
* *
133686 CAATTATTTTTATTGTAGTATGAATTCATTTTGTTTCCTTTAAAACTAGAA
1 CAATTATTTTCATTGTAGTATGAATTCATTTTGTTTCCTTTAAAATTAGAA
133737 CTAGAATGTA
Statistics
Matches: 108, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
62 108 1.00
ACGTcount: A:0.30, C:0.11, G:0.10, T:0.49
Consensus pattern (62 bp):
CAATTATTTTCATTGTAGTATGAATTCATTTTGTTTCCTTTAAAATTAGAATGTAATTCTTA
Found at i:134125 original size:18 final size:18
Alignment explanation
Indices: 134084--134126 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
134074 CTTCTTAACT
134084 TTGAGGAAGAAGAAGAGG
1 TTGAGGAAGAAGAAGAGG
** * *
134102 GAGAGGAAGAGGATGAGG
1 TTGAGGAAGAAGAAGAGG
134120 TTGAGGA
1 TTGAGGA
134127 TGATGATGTT
Statistics
Matches: 19, Mismatches: 6, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.40, C:0.00, G:0.49, T:0.12
Consensus pattern (18 bp):
TTGAGGAAGAAGAAGAGG
Found at i:137121 original size:14 final size:15
Alignment explanation
Indices: 137100--137138 Score: 64
Period size: 14 Copynumber: 2.7 Consensus size: 15
137090 AGCTTCCTAG
137100 AGAAGAAGAAAAAGA
1 AGAAGAAGAAAAAGA
137115 A-AAGAAGAAAAAGA
1 AGAAGAAGAAAAAGA
137129 AGAAG-AGAAA
1 AGAAGAAGAAA
137139 GATGGGACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 19 0.83
15 4 0.17
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (15 bp):
AGAAGAAGAAAAAGA
Found at i:137122 original size:17 final size:17
Alignment explanation
Indices: 137100--137137 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
137090 AGCTTCCTAG
137100 AGAAGAAGAAA-AAGAAA
1 AGAAGAA-AAAGAAGAAA
*
137117 AGAAGAAAAAGAAGAAG
1 AGAAGAAAAAGAAGAAA
137134 AGAA
1 AGAA
137138 AGATGGGACA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 3 0.16
17 16 0.84
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (17 bp):
AGAAGAAAAAGAAGAAA
Found at i:137916 original size:35 final size:35
Alignment explanation
Indices: 137872--137942 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
137862 TTTGAGAACA
*
137872 TTTTCACTCGGTTCACTTCGGGATCCCGATCCAAT
1 TTTTCACTCGATTCACTTCGGGATCCCGATCCAAT
137907 TTTTCACTCGATTCACTTCGGGATCCCGATCCAAT
1 TTTTCACTCGATTCACTTCGGGATCCCGATCCAAT
137942 T
1 T
137943 CTATAAAATT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.18, C:0.31, G:0.15, T:0.35
Consensus pattern (35 bp):
TTTTCACTCGATTCACTTCGGGATCCCGATCCAAT
Found at i:138073 original size:22 final size:22
Alignment explanation
Indices: 138048--138122 Score: 89
Period size: 22 Copynumber: 3.4 Consensus size: 22
138038 TTGAATATTT
138048 TTATGAAATTTTGATAACTACC
1 TTATGAAATTTTGATAACTACC
* * **
138070 TTATTAAATTTTGATAACCATG
1 TTATGAAATTTTGATAACTACC
*
138092 TTATGAAATTTTGATAATTTACC
1 TTATGAAATTTTGATAA-CTACC
138115 -TATGAAAT
1 TTATGAAAT
138123 ATGAAACTTT
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
22 42 0.98
23 1 0.02
ACGTcount: A:0.37, C:0.09, G:0.09, T:0.44
Consensus pattern (22 bp):
TTATGAAATTTTGATAACTACC
Found at i:138209 original size:23 final size:24
Alignment explanation
Indices: 138145--138210 Score: 66
Period size: 24 Copynumber: 2.8 Consensus size: 24
138135 TAACATAATC
*
138145 ATGAAATTTTAATAAAC--CTTCCT
1 ATGAAATTTT-ATAACCTTCTTCCT
*
138168 ATGAAATTTTGTAACCTTCTTCCT
1 ATGAAATTTTATAACCTTCTTCCT
**
138192 ATGATTTTTTATAA-CTTCT
1 ATGAAATTTTATAACCTTCT
138211 CTGGTGAAGT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
22 4 0.11
23 15 0.42
24 17 0.47
ACGTcount: A:0.30, C:0.17, G:0.06, T:0.47
Consensus pattern (24 bp):
ATGAAATTTTATAACCTTCTTCCT
Found at i:138692 original size:17 final size:17
Alignment explanation
Indices: 138670--138703 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
138660 TGCTAGTGTG
138670 TGAGATATATATAAACT
1 TGAGATATATATAAACT
138687 TGAGATATATATAAACT
1 TGAGATATATATAAACT
138704 GAAAAATGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.06, G:0.12, T:0.35
Consensus pattern (17 bp):
TGAGATATATATAAACT
Found at i:139804 original size:32 final size:28
Alignment explanation
Indices: 139747--139802 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
139737 AACCTATCAG
139747 CATAATCCAACCGTTTGATTGAAATAAA
1 CATAATCCAACCGTTTGATTGAAATAAA
*
139775 CATAATCCAACCGTTTGATTGATATAAA
1 CATAATCCAACCGTTTGATTGAAATAAA
139803 TAGACTGTGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.41, C:0.18, G:0.11, T:0.30
Consensus pattern (28 bp):
CATAATCCAACCGTTTGATTGAAATAAA
Found at i:144443 original size:16 final size:16
Alignment explanation
Indices: 144422--144458 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
144412 AGTAAGGACT
144422 AAATCCCAAGATTCAG
1 AAATCCCAAGATTCAG
144438 AAATCCCAAGATTCAG
1 AAATCCCAAGATTCAG
144454 AAATC
1 AAATC
144459 TCTTTACTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.46, C:0.24, G:0.11, T:0.19
Consensus pattern (16 bp):
AAATCCCAAGATTCAG
Found at i:147055 original size:331 final size:328
Alignment explanation
Indices: 146342--147385 Score: 1374
Period size: 331 Copynumber: 3.2 Consensus size: 328
146332 CCTTGAAATA
* * * *
146342 TAATCAAATCTCAGACACATTGGAATTAAGGATATGTTTTTACGGGCATCTAAATCTTGTTTCGA
1 TAATCAAATCTCAGCCACATTGGATTTAAGGATATGTTTTTACGAGCATCTGAATCTTGTTTCGA
* * *
146407 TTTAATTAGAAATTAAATTGGAAAAAAATAGGAAAAACAATATTAGAAGTGTGAAAAGCCCACCT
66 TTTAATTAGAAATTAATTTGG-AAAAAATAGGAAAAACAATATTAGAAGCGTGAAAAG-CCACCA
* *
146472 TTCTTTTTGGCGTTCAATTATATATTTTTATGCGTACTTTGGGCAAAAATTGAGGAAAAATATTT
129 ATCTTTTTGGCGTTCAATTATATATTTTTATGCATA-TTTGGGCAAAAATTGAGGAAAAATATTT
** * *
146537 CGGGTCAAAATTTGCAAAATTTTAGCCGAAATCATGTA-T-----T-AAGGTTTCTGGTTGAAAA
193 CGGGTCAATTTTTGCAAAATTTTAGCCGAAATCATGTACTAACCATCACGATTTCTGGTTGAAAA
* * *
146595 CGCGTTCCGGGGCATCGGCTCAGTTTTGCATAATTTTTAGCGCAGAGAGTAATTGAAATATCTAT
258 CGCGTTCCGGGGC-TCCGCTCAGTTTTGCATAATTTTTGGCGCAGAGAGTCATTGAAATATCTAT
146660 ATTCATC
322 ATTCATC
* * *
146667 TAATCAAATCTCAGCCAGATAGGTTTTAAGGATATGTTTTTACGAGCATCTGAATCTTGTTTCGA
1 TAATCAAATCTCAGCCACATTGGATTTAAGGATATGTTTTTACGAGCATCTGAATCTTGTTTCGA
* * * * *
146732 TTT-ATACAGAAATTAATTTGGTAAAAATAGGAAAAACGATATTAGAAGCGTTAAAAGCCTTCCA
66 TTTAAT-TAGAAATTAATTTGGAAAAAATAGGAAAAACAATATTAGAAGCGTGAAAAGCC-ACCA
* * * * *
146796 ATATTTTTGGCGTTCAATTATATATTATATATGTATATTTAGGGCAAAAATTGATGAACAATATT
129 ATCTTTTTGGCGTTCAATTATATATT-TTTATGCATATTT-GGGCAAAAATTGAGGAAAAATATT
* * *
146861 TTGGGTCAATTTTTGCAAAATTTTAGCTGAAATCATGTACTAACCATCACGATTTCTGGCTGAAA
192 TCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCATGTACTAACCATCACGATTTCTGGTTGAAA
* * * * * *
146926 ACGCGTTCCGGGGCTCCGATCAGTCTTGCAAAATTTTTGGCGTAAAG-GCTCATTGAAATATATA
257 ACGCGTTCCGGGGCTCCGCTCAGTTTTGCATAATTTTTGGCGCAGAGAG-TCATTGAAATATCTA
146990 TATTCATC
321 TATTCATC
* * * *
146998 TAATCAAATCTAAGCCACATTGGATTTAAGGATATGTTTTTACGTGCATCTGAATCTTGTTTAGG
1 TAATCAAATCTCAGCCACATTGGATTTAAGGATATGTTTTTACGAGCATCTGAATCTTGTTTCGA
* *
147063 TTTAATTGGAAATTAATTTGGAAAAAATAGGAAAAACCATATTAGAAGCGTGAAAAGTCCACCAA
66 TTTAATTAGAAATTAATTTGGAAAAAATAGGAAAAACAATATTAGAAGCGTGAAAAG-CCACCAA
* * *
147128 TCTTGTTT-GCGTTCGATTATATATTTTTTATGCATATTTTGGG-AAAAATTGAGGAAAAAGAAT
130 TCTT-TTTGGCGTTCAATTATATA-TTTTTATGCATA-TTTGGGCAAAAATTGAGGAAAAATATT
* *
147191 TCGGATCAATTTTTGCAAAATTTTGGCCGAAATCATGTACTAACCATCAC-AGTTTCTGGTTGAA
192 TCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCATGTACTAACCATCACGA-TTTCTGGTTGAA
*
147255 AACGCGTTCCGGGGCTCCGGCTCAGTTTTGCATGATTTTTGGCGCAGAGAGTCATTGAAATATCT
256 AACGCGTTCCGGGGCTCC-GCTCAGTTTTGCATAATTTTTGGCGCAGAGAGTCATTGAAATATCT
147320 ATATTCATC
320 ATATTCATC
* * * * *
147329 TAATCAAATCTCAGCCACACTGGATTGAAGGAAATGTTTTTACAAGCATCTTAATCT
1 TAATCAAATCTCAGCCACATTGGATTTAAGGATATGTTTTTACGAGCATCTGAATCT
147386 AAAAATTGAG
Statistics
Matches: 621, Mismatches: 78, Indels: 34
0.85 0.11 0.05
Matches are distributed among these distances:
323 2 0.00
324 63 0.10
325 138 0.22
326 1 0.00
329 1 0.00
330 92 0.15
331 283 0.46
332 41 0.07
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.34
Consensus pattern (328 bp):
TAATCAAATCTCAGCCACATTGGATTTAAGGATATGTTTTTACGAGCATCTGAATCTTGTTTCGA
TTTAATTAGAAATTAATTTGGAAAAAATAGGAAAAACAATATTAGAAGCGTGAAAAGCCACCAAT
CTTTTTGGCGTTCAATTATATATTTTTATGCATATTTGGGCAAAAATTGAGGAAAAATATTTCGG
GTCAATTTTTGCAAAATTTTAGCCGAAATCATGTACTAACCATCACGATTTCTGGTTGAAAACGC
GTTCCGGGGCTCCGCTCAGTTTTGCATAATTTTTGGCGCAGAGAGTCATTGAAATATCTATATTC
ATC
Found at i:147909 original size:541 final size:539
Alignment explanation
Indices: 146841--147920 Score: 1347
Period size: 541 Copynumber: 2.0 Consensus size: 539
146831 TATTTAGGGC
* * * * *
146841 AAAAATTGATGAACAATATTTTGGGTCAATTTTTGCAAAATTTTAGCTGAAATCATGTACTAACC
1 AAAAATTGAGGAAAAATATGTCGGGTCAATTTTTGCAAAATGTTAGCTGAAATCATG-----A-C
146906 ATCACGATTTCTGGCTGAAAACGCGTTCCGGGGCTCCGATCAGTCTTGCAAAATTTTTGGCGTAA
60 ATCACGATTTCTGGCTGAAAACGCGTTCCGGGGCTCCGATCAGTCTTGCAAAATTTTTGGCGTAA
*
146971 AGGCTCATTGAAATATATATATTCATCTAATCAAATCTAAGCCACATTGGATTTAAGGATATGTT
125 AGGCTCATTGAAATATATATATTCATCTAATCAAATCTAAGCCACATTGGATTTAAGGAAATGTT
* * *
147036 TTTACGTGCATCTGAATCTTGTTTAGGTTTAATTGGAAATTAATTTGGAAAAAATAGGAAAAACC
190 TTTACGAGCATCTGAATCTTGTTTAGATTTAATTAGAAATTAATTTGGAAAAAATAGGAAAAACC
* * *
147101 ATATTAGAAGCGTGAAAAGTCCACCAATCTTGTTTGCGTTCGATTATATATTTTTTATGCATATT
255 ATATTAGAAGCATGAAAAGTCCACCAATCTTGTTGGCGTTCGATTATATACTTTTTATGCATATT
* * * * * *
147166 TTGGGAAAAATTGAGGAAAAAGAATTCGGATCAATTTTTGCAAAATTTTGGCCGAAATCATGTAC
320 GTGGCAAAAATTAACGAAAAACAATTCGGATCAATTTTTGCAAAATTTTAGCCGAAATCATGTAC
** * * * *
147231 TAACCATCACAGTTTCTGGTTGAAAACGCGTTCCGGGGCTCCGGCTCAGTTTTGCATGATTTTTG
385 TAACCATCACAGTTTCTGACTGAAAACGCGTTCAGGGGCCCCGGCACAATTTTGCATGATTTTTG
* ** *
147296 GCGCAGAGAGTCATTGAAATATCTATATTCATCTAATCAAATCTCAGCCACACTGGATTGAAGGA
450 GCACAGAGACACATTGAAATATCTATATTCATCTAATCAAATCTCAGCCACACTGGATTGAAGAA
147361 AATGTTTTTACAAGCATCTTAATCT
515 AATGTTTTTACAAGCATCTTAATCT
*
147386 AAAAATTGAGGAAAAATATGTCGGGTTAATTTTTGCAAAATGTTAGCTGAAATCATG-CATCACG
1 AAAAATTGAGGAAAAATATGTCGGGTCAATTTTTGCAAAATGTTAGCTGAAATCATGACATCACG
* * * * ** *
147450 GTTT-TAGGCTGAAAACGCGTTCCGGGGCTCTGGCTCAGTTTTGCATGATTTTTGGCGTAGAGGC
66 ATTTCT-GGCTGAAAACGCGTTCCGGGGCTC-CGATCAGTCTTGCAAAATTTTTGGCGTAAAGGC
* *
147514 TCATTGAAATATCTATATTCATCTAATCAAATC-ACAGCCATATTGGATTTAAGGAAATGTTTTT
129 TCATTGAAATATATATATTCATCTAATCAAATCTA-AGCCACATTGGATTTAAGGAAATGTTTTT
* *
147578 ACGAGCATCTTAATCTTGTTTCGATTTAATTAGAACA-TAATTTGGAAAAAAATAGGAAAAACCA
193 ACGAGCATCTGAATCTTGTTTAGATTTAATTAGAA-ATTAATTTGG-AAAAAATAGGAAAAACCA
* *
147642 TATTTGAAGCATGAAAA-TCC-CTCAAATAGTT-TTGGCGTT-GAATTATATACTTTTTATG-AG
256 TATTAGAAGCATGAAAAGTCCAC-C-AAT-CTTGTTGGCGTTCG-ATTATATACTTTTTATGCA-
* ** ** ** **
147702 TATTGTGGCCAAAAATTAACGAACAACTTTTCGTTTCCGTTTTAT-CAAAATTTTAGTTGAAATC
316 TATTGTGG-CAAAAATTAACGAAAAACAATTCGGATCAATTTT-TGCAAAATTTTAGCCGAAATC
* * ** *
147766 GTTTGTTAACCATCACGGTTTCTGACTGAAAACGCGTTCAGGGGCCCCGGCACAATTTTGCATGA
379 ATGTACTAACCATCACAGTTTCTGACTGAAAACGCGTTCAGGGGCCCCGGCACAATTTTGCATGA
* * * *
147831 TTTTTGGCACCGAGACACCTTGAAATATCTATATTCATCTAATCAAATCTCATCCACATTGGAAT
444 TTTTTGGCACAGAGACACATTGAAATATCTATATTCATCTAATCAAATCTCAGCCACACTGG-AT
*
147896 T-AA-AAATATGTTTTTACGAGCATCT
508 TGAAGAAA-ATGTTTTTACAAGCATCT
147921 AAATTTTGTT
Statistics
Matches: 460, Mismatches: 61, Indels: 32
0.83 0.11 0.06
Matches are distributed among these distances:
537 1 0.00
538 36 0.08
539 130 0.28
540 69 0.15
541 169 0.37
542 4 0.01
545 51 0.11
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (539 bp):
AAAAATTGAGGAAAAATATGTCGGGTCAATTTTTGCAAAATGTTAGCTGAAATCATGACATCACG
ATTTCTGGCTGAAAACGCGTTCCGGGGCTCCGATCAGTCTTGCAAAATTTTTGGCGTAAAGGCTC
ATTGAAATATATATATTCATCTAATCAAATCTAAGCCACATTGGATTTAAGGAAATGTTTTTACG
AGCATCTGAATCTTGTTTAGATTTAATTAGAAATTAATTTGGAAAAAATAGGAAAAACCATATTA
GAAGCATGAAAAGTCCACCAATCTTGTTGGCGTTCGATTATATACTTTTTATGCATATTGTGGCA
AAAATTAACGAAAAACAATTCGGATCAATTTTTGCAAAATTTTAGCCGAAATCATGTACTAACCA
TCACAGTTTCTGACTGAAAACGCGTTCAGGGGCCCCGGCACAATTTTGCATGATTTTTGGCACAG
AGACACATTGAAATATCTATATTCATCTAATCAAATCTCAGCCACACTGGATTGAAGAAAATGTT
TTTACAAGCATCTTAATCT
Found at i:148195 original size:870 final size:868
Alignment explanation
Indices: 146516--148255 Score: 2306
Period size: 870 Copynumber: 2.0 Consensus size: 868
146506 TACTTTGGGC
* * * *
146516 AAAAATTGAGGAAAAATATTTCGGGTCAAAATTTGCAAAATTTTAGCCGAAATCATGTATTAAGG
1 AAAAATTGAGGAAAAATATGTCGGGTCAAAATTTGCAAAATGTTAGCCGAAATCATGCATCAAGG
*
146581 TTTCTGGTTGAAAACGCGTTCCGGGGCATCGGCTCAGTTTTGCATAATTTTTAGCGCAGAGAGTA
66 TTTCTGGCTGAAAACGCGTTCCGGGGCATCGGCTCAGTTTTGCATAATTTTTAGCGCAGAGAGTA
* * *
146646 ATTGAAATATCTATATTCATCTAATCAAATCTCAGCCAGATAGGTTTTAAGGATATGTTTTTACG
131 ATTGAAATATCTATATTCATCTAATCAAATCACAGCCAGATAGGATTTAAGGAAATGTTTTTACG
* *
146711 AGCATCTGAATCTTGTTTCGATTTATACAGAAATTAATTTGGTAAAAATAGGAAAAACGATATTA
196 AGCATCTGAATCTTGTTTCGATTTATACAGAAATTAATTTGGAAAAAATAGGAAAAACCATATTA
* * * * * *
146776 GAAGCGTTAAAAGCCTTCCAATATTTTTGGCGTTCAATTATATATTATATATGTATATTTAGGGC
261 GAAGCATGAAAAGCCCTCAAATAGTTTTGGCGTTCAATTATATATTATATATGTATATTTAGGCC
* * *
146841 AAAAATTGATGAACAATATTTTGGGTCAATTTTTGCAAAATTTTAGCTGAAATCATGTACTAACC
326 AAAAATTAACGAACAATATTTCGGGTCAATTTTTGCAAAATTTTAGCTGAAATCATGTACTAACC
* * * * **
146906 ATCACGATTTCTGGCTGAAAACGCGTTCCGGGGCTCCGATCAGTCTTGCAAAATTTTTGGCGTAA
391 ATCACGATTTCTGACTGAAAACGCGTTCAGGGGCCCCGATCAATCTTGCAAAATTTTTGGCACAA
* * * **
146971 AGGCTCATTGAAATATATATATTCATCTAATCAAATCTAAGCCACATTGGATTTAAGGATATGTT
456 AGACACATTGAAATATATATATTCATCTAATCAAATCTAAGCCACATTGGAATTAAAAATATGTT
* * * **
147036 TTTACGTGCATCTGAATCTTGTTTAGGTTTAATTGGAAATTAATTTGGAAAAAATAGGAAAAACC
521 TTTACGAGCATCTAAATCTTGTTTAGATTTAATCAGAAATTAATTTGGAAAAAATAGGAAAAACC
* * * *
147101 ATATTAGAAGCGTGAAAAGTCCACCAATCTTGTTTGCGTTCGATTATATATTTTTTATGCATATT
586 ATATTAGAAGCGTGAAAAGTCCACCAATATTGTTTGCGTTCAATTATATATTATTTATGCATAGT
* *
147166 TTGGGAAAAATTGAGGAAAAAGAATTCGGATCAATTTTTGCAAAATTTTGGCCGAAATCATGTAC
651 TTGGGAAAAATTGAGGAAAAAGAATTCGGATCAATTTTTGCAAAATTTTAGACGAAATCATGTAC
* *
147231 TAACCATCACAGTTTCTGGTTGAAAACGCGTTCCGGGGCTCCGGCTCAGTTTTGCATGATTTTTG
716 T-A-CATCACAGTTTCTGGTTGAAAACGCGTTCCGGGGCTCCGGCTAAGTTCTGCATGATTTTTG
* *
147296 GCGCAGAGAGTCATTGAAATATCTATATTCATCTAATCAAATCTCAGCCACACTGGATTGAAGGA
779 GCGCAGAGAGTCATTAAAATATCTATATTCATCTAATCAAATCTCAGCCACACTAGATTGAAGGA
*
147361 AATGTTTTTACAAGCATCTTAATCT
844 AATGTTTTTACAAGCATCTGAATCT
* ** * *
147386 AAAAATTGAGGAAAAATATGTCGGGTTAATTTTTGCAAAATGTTAGCTGAAATCATGCATCACGG
1 AAAAATTGAGGAAAAATATGTCGGGTCAAAATTTGCAAAATGTTAGCCGAAATCATGCATCAAGG
* * *
147451 TTT-TAGGCTGAAAACGCGTTCCGGGGC-TCTGGCTCAGTTTTGCATGATTTTTGGCGTAGAG-G
66 TTTCT-GGCTGAAAACGCGTTCCGGGGCATC-GGCTCAGTTTTGCATAATTTTTAGCGCAGAGAG
* * *
147513 CTCATTGAAATATCTATATTCATCTAATCAAATCACAGCCATATTGGATTTAAGGAAATGTTTTT
129 -TAATTGAAATATCTATATTCATCTAATCAAATCACAGCCAGATAGGATTTAAGGAAATGTTTTT
* *
147578 ACGAGCATCTTAATCTTGTTTCGATTTA-ATTAGAACA-TAATTTGGAAAAAAATAGGAAAAACC
193 ACGAGCATCTGAATCTTGTTTCGATTTATA-CAGAA-ATTAATTTGG-AAAAAATAGGAAAAACC
* * * *
147641 ATATTTGAAGCATGAAAATCCCTCAAATAGTTTTGGCGTTGAATTATATACTT-TTTATG-AGTA
255 ATATTAGAAGCATGAAAAGCCCTCAAATAGTTTTGGCGTTCAATTATATA-TTATATATGTA-TA
** ** *
147704 TTGT-GGCCAAAAATTAACGAACAACT-TTTCGTTTCCGTTTTAT-CAAAATTTTAGTTGAAATC
318 TT-TAGGCCAAAAATTAACGAACAA-TATTTCGGGTCAATTTT-TGCAAAATTTTAGCTGAAATC
* * ** * * **
147766 GTTTGTTAACCATCACGGTTTCTGACTGAAAACGCGTTCAGGGGCCCCGGCA-CAATTTTGCATG
380 ATGTACTAACCATCACGATTTCTGACTGAAAACGCGTTCAGGGGCCCC-G-ATCAATCTTGCAAA
** * * * *
147830 ATTTTTGGCACCGAGACACCTTGAAATATCTATATTCATCTAATCAAATCTCATCCACATTGGAA
443 ATTTTTGGCACAAAGACACATTGAAATATATATATTCATCTAATCAAATCTAAGCCACATTGGAA
* *
147895 TTAAAAATATGTTTTTACGAGCATCTAAATTTTGTTTCGATTTAATCAGAAATTAATTTGGAAAA
508 TTAAAAATATGTTTTTACGAGCATCTAAATCTTGTTTAGATTTAATCAGAAATTAATTTGGAAAA
*
147960 AATAGG-AAAACCAATATTA-AGAGCGTGAAAAG-CCTGCCAATATT-TTTGGCGTTCAATTATA
573 AATAGGAAAAACC-ATATTAGA-AGCGTGAAAAGTCC-ACCAATATTGTTT-GCGTTCAATTATA
* * * * *
148021 TATTATTTATGCATAGTTTGGGAAAAATTGATGAAAAATATTTTGGGTCAATTTTTGCAAAATTT
634 TATTATTTATGCATAGTTTGGGAAAAATTGAGGAAAAAGAATTCGGATCAATTTTTGCAAAATTT
* * *
148086 TAGATGAAATCATGTACGT-TATCACGGTTTCTGGTTGAAAACGCGTTCCGGGGCTCCGGCTAAG
699 TAGACGAAATCATGTAC-TACATCACAGTTTCTGGTTGAAAACGCGTTCCGGGGCTCCGGCTAAG
* * *
148150 TTCTGCATTATTTTTGGCGCAGAGAGTCATTAAAATATTTATATTCATCTAATCGAATCTCAGCC
763 TTCTGCATGATTTTTGGCGCAGAGAGTCATTAAAATATCTATATTCATCTAATCAAATCTCAGCC
* *
148215 ACACTAGATTTAAGGAAATGTTTTTACGAGCATCTGAATCT
828 ACACTAGATTGAAGGAAATGTTTTTACAAGCATCTGAATCT
148256 TGTTTTGATT
Statistics
Matches: 754, Mismatches: 98, Indels: 36
0.85 0.11 0.04
Matches are distributed among these distances:
869 5 0.01
870 345 0.46
871 164 0.22
872 238 0.32
873 2 0.00
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34
Consensus pattern (868 bp):
AAAAATTGAGGAAAAATATGTCGGGTCAAAATTTGCAAAATGTTAGCCGAAATCATGCATCAAGG
TTTCTGGCTGAAAACGCGTTCCGGGGCATCGGCTCAGTTTTGCATAATTTTTAGCGCAGAGAGTA
ATTGAAATATCTATATTCATCTAATCAAATCACAGCCAGATAGGATTTAAGGAAATGTTTTTACG
AGCATCTGAATCTTGTTTCGATTTATACAGAAATTAATTTGGAAAAAATAGGAAAAACCATATTA
GAAGCATGAAAAGCCCTCAAATAGTTTTGGCGTTCAATTATATATTATATATGTATATTTAGGCC
AAAAATTAACGAACAATATTTCGGGTCAATTTTTGCAAAATTTTAGCTGAAATCATGTACTAACC
ATCACGATTTCTGACTGAAAACGCGTTCAGGGGCCCCGATCAATCTTGCAAAATTTTTGGCACAA
AGACACATTGAAATATATATATTCATCTAATCAAATCTAAGCCACATTGGAATTAAAAATATGTT
TTTACGAGCATCTAAATCTTGTTTAGATTTAATCAGAAATTAATTTGGAAAAAATAGGAAAAACC
ATATTAGAAGCGTGAAAAGTCCACCAATATTGTTTGCGTTCAATTATATATTATTTATGCATAGT
TTGGGAAAAATTGAGGAAAAAGAATTCGGATCAATTTTTGCAAAATTTTAGACGAAATCATGTAC
TACATCACAGTTTCTGGTTGAAAACGCGTTCCGGGGCTCCGGCTAAGTTCTGCATGATTTTTGGC
GCAGAGAGTCATTAAAATATCTATATTCATCTAATCAAATCTCAGCCACACTAGATTGAAGGAAA
TGTTTTTACAAGCATCTGAATCT
Found at i:148817 original size:332 final size:333
Alignment explanation
Indices: 147386--148921 Score: 1751
Period size: 332 Copynumber: 4.6 Consensus size: 333
147376 ATCTTAATCT
* * * * *
147386 AAAAATTGAGGAAAAATATGTCGGGTTAATTTTTGCAAAATGTTAGCTGAAATCATG-------C
1 AAAAATTGACGAAAAATATTTCGGGTCAAGTTTTGCAAAATTTTAGCTGAAATCATGTACTAACC
* *
147444 ATCACGGTTT-TAGGCTGAAAACGCGTTCCGGGGCTCTGGCTCAGTTTTGCATGATTTTTGGCGT
66 ATCACGGTTTCT-GGCTGAAAACGCGTTCCGGGGCTCCGGCTCAGTTTTGCATGATTTTTGGCGC
* * * *
147508 AGAGGCTCATTGAAATATCTATATTCATCTAATCAAATCACAGCCATATTGGATTTAAGGAAATG
130 AGAGACTCATTGAAATATCTATATTCATCTAATCAAATCTCAGCCACATTGGAATTAAGGAAATG
* *
147573 TTTTTACGAGCATCTTAATCTTGTTTCGATTTAATTAGAACA-TAATTTGGAAAAAAATAGGAAA
195 TTTTTACGAGCATCTGAATCTTGTTTCGATTTAATCAGAA-ATTAATTTGGAAAAAAATAGGAAA
* * * * *
147637 AACCATATTTGAAGCATGAAAATCCCTCAAATAGTTTTGGCGTTGAATTATATACTTTTTATGAG
259 AACCATATTAGAAGCATGAAAAGCCCGCAAATAGTTTTGGCGTTCAATTATATATTTTTTATGAG
*
147702 TATTGTGGCC
324 TATTGTGGGC
* * ** * * * * * **
147712 AAAAATTAACGAACAACT-TTTCGTTTC-CGTTTTATCAAAATTTTAGTTGAAATCGTTTGTTAA
1 AAAAATTGACGAA-AAATATTTCGGGTCAAGTTTT-GCAAAATTTTAGCTGAAATCATGTACTAA
* * * * * *
147775 CCATCACGGTTTCTGACTGAAAACGCGTTCAGGGGCCCCGGCACAATTTTGCATGATTTTTGGCA
64 CCATCACGGTTTCTGGCTGAAAACGCGTTCCGGGGCTCCGGCTCAGTTTTGCATGATTTTTGGCG
* * * * *
147840 CCGAGACACCTTGAAATATCTATATTCATCTAATCAAATCTCATCCACATTGGAATTAA-AAATA
129 CAGAGACTCATTGAAATATCTATATTCATCTAATCAAATCTCAGCCACATTGGAATTAAGGAA-A
* *
147904 TGTTTTTACGAGCATCTAAATTTTGTTTCGATTTAATCAGAAATTAATTTGG-AAAAAATAGG-A
193 TGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATCAGAAATTAATTTGGAAAAAAATAGGAA
* * * * *
147967 AAACCAATATTA-AGAGCGTGAAAAGCCTGCCAATATTTTTGGCGTTCAATTATATATTATTTAT
258 AAACC-ATATTAGA-AGCATGAAAAGCCCGCAAATAGTTTTGGCGTTCAATTATATATTTTTTAT
148031 GCA-TAGTT-TGGG-
321 G-AGTA-TTGTGGGC
* * * *
148043 AAAAATTGATGAAAAATATTTTGGGTCAATTTTTGCAAAATTTTAGATGAAATCATGTACGT---
1 AAAAATTGACGAAAAATATTTCGGGTCAAGTTTTGCAAAATTTTAGCTGAAATCATGTAC-TAAC
* * * * *
148105 TATCACGGTTTCTGGTTGAAAACGCGTTCCGGGGCTCCGGCTAAGTTCTGCATTATTTTTGGCGC
65 CATCACGGTTTCTGGCTGAAAACGCGTTCCGGGGCTCCGGCTCAGTTTTGCATGATTTTTGGCGC
* * * * * * *
148170 AGAGAGTCATTAAAATATTTATATTCATCTAATCGAATCTCAGCCACACTAGATTTAAGGAAATG
130 AGAGACTCATTGAAATATCTATATTCATCTAATCAAATCTCAGCCACATTGGAATTAAGGAAATG
* * *
148235 TTTTTACGAGCATCTGAATCTTGTTTTGATTTAATTAGAACTTAATTTGGAAATAAAATAGGAAA
195 TTTTTACGAGCATCTGAATCTTGTTTCGATTTAATCAGAAATTAATTTGGAAA-AAAATAGGAAA
* * ** *
148300 AACCATATTTGAAGCATGAAAATCCCTTAAATAGTTTTGGCGTTGAATTATATATTTTTTATGAG
259 AACCATATTAGAAGCATGAAAAGCCCGCAAATAGTTTTGGCGTTCAATTATATATTTTTTATGAG
148365 TATTGT-GGC
324 TATTGTGGGC
* * ** * * * **
148374 AAAAAATTAACGAAATACT-TTTCGTTTTC--GTTTTATCAAAATTTTAGTTGAAATCGTGTGTT
1 -AAAAATTGACGAAA-AATATTTCG-GGTCAAGTTTT-GCAAAATTTTAGCTGAAATCATGTACT
* * * * *
148436 AACCATCACGGTTTCTGACTGAAAATGCGTTCAGGGGCCCCGGCTCAGTTATGCATGATTTTTGG
62 AACCATCACGGTTTCTGGCTGAAAACGCGTTCCGGGGCTCCGGCTCAGTTTTGCATGATTTTTGG
* * *
148501 CGCCGAGACTCCTTGAAATATCTATATTCATCTAATCAAATCTCAGCCACATTGGAATTAAGGAT
127 CGCAGAGACTCATTGAAATATCTATATTCATCTAATCAAATCTCAGCCACATTGGAATTAAGGAA
*
148566 ATGTTTATACGAGCATCTGAATCTTGTTTCGATTTAATCAGAAATTAATTTGG-AAAAAATAGGA
192 ATGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATCAGAAATTAATTTGGAAAAAAATAGGA
* * **
148630 AAAA-CATGATTAGAAGCGTGAAAAGCCCGCCAATCTTTTTGGCGTTCAATTATATATTTTTTAT
257 AAAACCAT-ATTAGAAGCATGAAAAGCCCGCAAATAGTTTTGGCGTTCAATTATATATTTTTTAT
* *
148694 AAGTATTTTGGGC
321 GAGTATTGTGGGC
* * *
148707 AAAAATTGAGGAAAAATATTTCGGGTCAAATTTTGCAAAATTTTAGCCGAAATCATGTACTAACC
1 AAAAATTGACGAAAAATATTTCGGGTCAAGTTTTGCAAAATTTTAGCTGAAATCATGTACTAACC
* *
148772 ATCACGGTTTCTGGTTGAAAACGCGTTCCGGGGCTCCGGCTCAGTTTTGCATGATTTTTGGCGAA
66 ATCACGGTTTCTGGCTGAAAACGCGTTCCGGGGCTCCGGCTCAGTTTTGCATGATTTTTGGCGCA
* * * *
148837 GAGAGTCATTGAAATATCTATATTTATCTAATCAAATCTCAGCCACACT-GAATTGAAGCAAATG
131 GAGACTCATTGAAATATCTATATTCATCTAATCAAATCTCAGCCACATTGGAATT-AAGGAAATG
* * *
148901 TTTTCAGGAGCATCTTAATCT
195 TTTTTACGAGCATCTGAATCT
148922 AAAAATTGAG
Statistics
Matches: 997, Mismatches: 173, Indels: 74
0.80 0.14 0.06
Matches are distributed among these distances:
325 4 0.00
326 34 0.03
327 3 0.00
329 149 0.15
330 12 0.01
331 119 0.12
332 349 0.35
333 169 0.17
334 158 0.16
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (333 bp):
AAAAATTGACGAAAAATATTTCGGGTCAAGTTTTGCAAAATTTTAGCTGAAATCATGTACTAACC
ATCACGGTTTCTGGCTGAAAACGCGTTCCGGGGCTCCGGCTCAGTTTTGCATGATTTTTGGCGCA
GAGACTCATTGAAATATCTATATTCATCTAATCAAATCTCAGCCACATTGGAATTAAGGAAATGT
TTTTACGAGCATCTGAATCTTGTTTCGATTTAATCAGAAATTAATTTGGAAAAAAATAGGAAAAA
CCATATTAGAAGCATGAAAAGCCCGCAAATAGTTTTGGCGTTCAATTATATATTTTTTATGAGTA
TTGTGGGC
Found at i:149080 original size:215 final size:215
Alignment explanation
Indices: 148707--149119 Score: 702
Period size: 215 Copynumber: 1.9 Consensus size: 215
148697 TATTTTGGGC
*
148707 AAAAATTGAGGAAAAATATTTCGGGTCAAATTTTGCAAAATTTTAGCCGAAATCATGTACTAACC
1 AAAAATTGAGGAAAAATATTTCGGGTCAAATTTTGCAAAATTTTAGCCGAAATCATGTACAAACC
* *
148772 ATCACGGTTTCTGGTTGAAAACGCGTTCCGGGGCTCCGGCTCAGTTTTGCATGATTTTTGGCGAA
66 ATCACGGTTTCTGGCTGAAAACGCGTTCCGAGGCTCCGGCTCAGTTTTGCATGATTTTTGGCGAA
* *
148837 GAGAGTCATTGAAATATCTATATTTATCTAATCAAATCTCAGCCACACT-GAATTGAAGCAAATG
131 GAGAGTCAATCAAATATCTATATTTATCTAATCAAATCTCAGCCACACTGGAATT-AAGCAAATG
148901 TTTTCAGGAGCATCTTAATCT
195 TTTTCAGGAGCATCTTAATCT
* * *
148922 AAAAATTGAGGAAAAATATTTCGGGTCAATTTTTGCAAAATTTTAGCTGAATTCATGTACAAACC
1 AAAAATTGAGGAAAAATATTTCGGGTCAAATTTTGCAAAATTTTAGCCGAAATCATGTACAAACC
*
148987 ATCACGGTTTCTGGCTGAAAACGCGTTCCGAGGCTCCGGCTCAGTTTTGCATGATTTTTGGCGCA
66 ATCACGGTTTCTGGCTGAAAACGCGTTCCGAGGCTCCGGCTCAGTTTTGCATGATTTTTGGCGAA
* * *
149052 GATAGTCAATCAAATATCTATTTTTATCTAATCAAATCTCAGCCACACTGGAATTAAGGAAATGT
131 GAGAGTCAATCAAATATCTATATTTATCTAATCAAATCTCAGCCACACTGGAATTAAGCAAATGT
149117 TTT
196 TTT
149120 TACGCGCATC
Statistics
Matches: 185, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
215 180 0.97
216 5 0.03
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Consensus pattern (215 bp):
AAAAATTGAGGAAAAATATTTCGGGTCAAATTTTGCAAAATTTTAGCCGAAATCATGTACAAACC
ATCACGGTTTCTGGCTGAAAACGCGTTCCGAGGCTCCGGCTCAGTTTTGCATGATTTTTGGCGAA
GAGAGTCAATCAAATATCTATATTTATCTAATCAAATCTCAGCCACACTGGAATTAAGCAAATGT
TTTCAGGAGCATCTTAATCT
Found at i:149641 original size:322 final size:326
Alignment explanation
Indices: 148922--149784 Score: 983
Period size: 322 Copynumber: 2.6 Consensus size: 326
148912 ATCTTAATCT
* * * *
148922 AAAAATTGAGGAAAAATATTTCGGGTCAATTTTTGCAAAATTTTAGCTGAATTCATGTACAAACC
1 AAAAATTGAGGAAAAA-AATTCTGGTCAATTTTTGCAAAATTTTAGCTGAAATCATGTACTAACC
* * *
148987 ATCACGGTTTCTGGCTGAAAACGCGTTCCGAGGCTCCGGCTCAGTTTTGCATGATTTTTGGCGCA
65 ATCACGGTTTCTGGCTGAAAACGCGTTTCGGGGCTCCGGCTCAGTTTTGCATGATTTTTAGCGCA
* * * *
149052 GATAGTCAATCAAATATCTATTTTTATCTAATCAAATCTCAGCCACACTGGAATTAAGGAAATGT
130 GATAGGC-ATC-AATATCGA---TAATCTAATCAAATCTAAGCCACACTGGAATTAAGGAAATGT
* * * *
149117 TTTTACGCGCATCTGAATTTTTGTTTCGATATAATCGAAAATTAATTTGGTAAAAATAGAAAAAA
190 TTTTACGAGCATCTGAATTCTTGTTTAGATATAATCGAAAATTAATTTGGAAAAAATAGAAAAAA
* * * * *
149182 CGATATTAGAATCGTGAAAACCCTGTCAATGTTTTGGCGTTCAATTATATATTATTTATGCATAT
255 CGATATAAAAAGCGTGAAAACCCTGCCAATCTTTTGGCGTTCAATTATATATTATTTATGCATAT
* *
149247 TTTGGGC
320 TTTGCGA
* * * *
149254 ATAAATTGATGAAAAATATTTTGGGTCAATTTTTGCAAAATTTTAGCTGAAATCATGTACTAACC
1 AAAAATTGAGGAAAAAAATTCT-GGTCAATTTTTGCAAAATTTTAGCTGAAATCATGTACTAACC
* *
149319 ATCACGGTTTCTGGCTGAAAACGCGTTTCGGGGCTCCGGATCAGTTTTGCATGATTTTTAGCG-T
65 ATCACGGTTTCTGGCTGAAAACGCGTTTCGGGGCTCCGGCTCAGTTTTGCATGATTTTTAGCGCA
* * *
149383 GA-AGGC-TC-AT-T-GA-AATCTAATCAAATCTAAGCCACATTGGATTTAAGGATATGTTTTTA
130 GATAGGCATCAATATCGATAATCTAATCAAATCTAAGCCACACTGGAATTAAGGAAATGTTTTTA
* * *
149442 CGAGCATCTGAA-TCTTGTTTAGATTTAATCGGAAATTAATTTGGAGAAAAAATAGGAAAAATC-
195 CGAGCATCTGAATTCTTGTTTAGATATAATCGAAAATTAATTT-G-GAAAAAATA-GAAAAAACG
* * * *
149505 ATATAAAAAGCGTGAAAA-GCTCGCCAATCTTTGTTGCGTTCGATTATATATTTTTTATGCATAT
257 ATATAAAAAGCGTGAAAACCCT-GCCAATCTTT-TGGCGTTCAATTATATATTATTTATGCATAT
149569 TTTGCGA
320 TTTGCGA
* * * * * *
149576 AAAAATTGAGGAAAAAGAATGCTGATTAATTTTTGCAAAATTTTGGCCGAAATCATGTTCTAACC
1 AAAAATTGAGGAAAAA-AATTCTGGTCAATTTTTGCAAAATTTTAGCTGAAATCATGTACTAACC
* * * * *
149641 ATCACAGTTTCTGGTTGAAAACGTGTTTCGGGGCTCCGGCTTAGTTTTGCATGATTTTTGGCGCA
65 ATCACGGTTTCTGGCTGAAAACGCGTTTCGGGGCTCCGGCTCAGTTTTGCATGATTTTTAGCGCA
** * * * *
149706 GGGAGTCATTGAAATATCTATATTCATCTAATCAAATCTCAGCCACACTGG-ATTGAAGGAAATG
130 GATAGGCA-T-CAATATCGATA---ATCTAATCAAATCTAAGCCACACTGGAATT-AAGGAAATG
149770 TTTTTACGAGCATCT
189 TTTTTACGAGCATCT
149785 TAATCTAAAA
Statistics
Matches: 448, Mismatches: 63, Indels: 38
0.82 0.11 0.07
Matches are distributed among these distances:
319 26 0.06
320 55 0.12
321 31 0.07
322 148 0.33
323 4 0.01
324 4 0.01
325 1 0.00
326 3 0.01
328 4 0.01
329 1 0.00
330 4 0.01
331 5 0.01
332 113 0.25
333 2 0.00
334 47 0.10
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34
Consensus pattern (326 bp):
AAAAATTGAGGAAAAAAATTCTGGTCAATTTTTGCAAAATTTTAGCTGAAATCATGTACTAACCA
TCACGGTTTCTGGCTGAAAACGCGTTTCGGGGCTCCGGCTCAGTTTTGCATGATTTTTAGCGCAG
ATAGGCATCAATATCGATAATCTAATCAAATCTAAGCCACACTGGAATTAAGGAAATGTTTTTAC
GAGCATCTGAATTCTTGTTTAGATATAATCGAAAATTAATTTGGAAAAAATAGAAAAAACGATAT
AAAAAGCGTGAAAACCCTGCCAATCTTTTGGCGTTCAATTATATATTATTTATGCATATTTTGCG
A
Found at i:149737 original size:869 final size:871
Alignment explanation
Indices: 148043--150340 Score: 3067
Period size: 869 Copynumber: 2.6 Consensus size: 871
148033 ATAGTTTGGG
* * * ***
148043 AAAAATTGATGAAAAATATTTTGGGTCAATTTTTGCAAAATTTTAGATGAAATCATGTAC-GTTA
1 AAAAATTGAGGAAAAATATTTCGGGTCAATTTTTGCAAAATTTTAGCTGAAATCATGTACAACCA
* * * *
148107 TCACGGTTTCTGGTTGAAAACGCGTTCCGGGGCTCCGGCTAAGTTCTGCATTATTTTTGGCGCAG
66 TCACGGTTTCTGGCTGAAAACGCGTTCCGGGGCTCCGGCTCAGTTTTGCATGATTTTTGGCGCAG
* * *
148172 AGAGTCATTAAAATATTTATATTCATCTAATCGAATCTCAGCCACACTAGATTTAAGGAAATGTT
131 A-AGTCATTAAAATATTTATATTCATCTAATCAAATCTCAGCCACACTGGAATTAAGGAAATGTT
*
148237 TTTACGAGCATCTGAATCTTGTTTTGATTTAATTAGAACTTAATTTGGAAATAAAATAGGAAAAA
195 TTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAACTTAATTTGGAAA-AAAATAGGAAAAA
148302 CCATATTTGAAGCATGAAAATCCCTTAAATAGTTTTGGCGTTGAATTATATATTTTTTATGAGTA
259 CCATATTTGAAGCATGAAAATCCCTTAAATAGTTTTGGCGTTGAATTATATATTTTTTATGAGTA
* *
148367 TTGTGGCAAAAAATTAACG--AAATACTTTTCGTTTTCGTTTTATCAAAATTTTAGTTGAAATCG
324 TTGTGGCAAAAAATTAACGAAAAATA-TTTT-G-TTTCGTTTTATCAAAATTTTAGCTGAAATCA
** * * * * *
148430 TGTGTTAACCATCACGGTTTCTGACTGAAAATGCG-TTCAGGGGCCCCGGCTCAGTTATGCATGA
386 TGTACTAACCATCACGGTTTCTGGCTGAAAACGCGTTTC-GGGGCTCCGGATCAGTTTTGCATGA
* * *
148494 TTTTTGGCGCCGAGACTCCTTGAAATATCTATATTCATCTAATCAAATCTCAGCCACATTGGAAT
450 TTTTTAGCGCCGAGACTCC----AATATCGATA-T-ATCTAATCAAATCTAAGCCACATTGGAAT
*
148559 TAAGGATATGTTTATACGAGCATCTGAATCTTGTTTCGATTTAATCAGAAATTAATTTGGAAAAA
509 TAAGGATATGTTTATACGAGCATCTGAATCTTGTTTAGATTTAATCAGAAATTAATTTGGAAAAA
* *
148624 ATAGGAAAAACATGATTAGAAGCGTGAAAAGCCCGCCAATCTTTTTGGCGTTCAATTATATATTT
574 ATAGGAAAAACATGATAAAAAGCGTGAAAAGCCCGCCAATCTTTTTGGCGTTCAATTATATATTT
* * * * * *
148689 TTTATAAGTATTTTGGGCAAAAATTGAGGAAAAATATTTCGGGTCAAATTTTGCAAAATTTTAGC
639 TTTATAAGTATTTTGCGAAAAAATTGAGGAAAAAGAATGCGGATCAAATTTTGCAAAATTTTAGC
*
148754 CGAAATCATGTACTAACCATCACGGTTTCTGGTTGAAAACGCGTTCCGGGGCTCCGGCTCAGTTT
704 CGAAATCATGTACTAACCATCACAGTTTCTGGTTGAAAACGCGTTCCGGGGCTCCGGCTCAGTTT
*
148819 TGCATGATTTTTGGCGAAGAGAGTCATTGAAATATCTATATTTATCTAATCAAATCTCAGCCACA
769 TGCATGATTTTTGGCGAAGAGAGTCATTGAAATATCTATATTCATCTAATCAAATCTCAGCCACA
*
148884 CTGAATTGAAGCAAATGTTTTCAGGAGCATCTTAATCT
834 CTGAATTGAAGCAAATGTTTTCACGAGCATCTTAATCT
*
148922 AAAAATTGAGGAAAAATATTTCGGGTCAATTTTTGCAAAATTTTAGCTGAATTCATGTACAAACC
1 AAAAATTGAGGAAAAATATTTCGGGTCAATTTTTGCAAAATTTTAGCTGAAATCATGTAC-AACC
*
148987 ATCACGGTTTCTGGCTGAAAACGCGTTCCGAGGCTCCGGCTCAGTTTTGCATGATTTTTGGCGCA
65 ATCACGGTTTCTGGCTGAAAACGCGTTCCGGGGCTCCGGCTCAGTTTTGCATGATTTTTGGCGCA
* * * * *
149052 GATAGTCAATCAAATATCTATTTTTATCTAATCAAATCTCAGCCACACTGGAATTAAGGAAATGT
130 GA-AGTCATTAAAATATTTATATTCATCTAATCAAATCTCAGCCACACTGGAATTAAGGAAATGT
* * * * * * *
149117 TTTTACGCGCATCTGAATTTTTGTTTCGATATAA-TCGAAAATTAATTTGG-TAAAAATAGAAAA
194 TTTTACGAGCATCTGAA-TCTTGTTTCGATTTAATTAG-AACTTAATTTGGAAAAAAATAGGAAA
* * * * * * *
149180 AACGATATTAGAATCGTGAAAA-CCCTGTCAAT-GTTTTGGCGTTCAATTATATATTATTTATGC
257 AACCATATTTGAAGCATGAAAATCCCT-TAAATAGTTTTGGCGTTGAATTATATATTTTTTATG-
* * * * ** *
149243 A-TATTTTGGGC-ATAAATTGATGAAAAATATTTTGGGTCAATTTT-TGCAAAATTTTAGCTGAA
320 AGTATTGT-GGCAAAAAATTAACGAAAAATATTTTGTTTC-GTTTTAT-CAAAATTTTAGCTGAA
149305 ATCATGTACTAACCATCACGGTTTCTGGCTGAAAACGCGTTTCGGGGCTCCGGATCAGTTTTGCA
382 ATCATGTACTAACCATCACGGTTTCTGGCTGAAAACGCGTTTCGGGGCTCCGGATCAGTTTTGCA
* * *
149370 TGATTTTTAGCG-TGAAGGCT-C-AT-T-GA-A-ATCTAATCAAATCTAAGCCACATTGGATTTA
447 TGATTTTTAGCGCCG-AGACTCCAATATCGATATATCTAATCAAATCTAAGCCACATTGGAATTA
* *
149428 AGGATATGTTTTTACGAGCATCTGAATCTTGTTTAGATTTAATCGGAAATTAATTTGGAGAAAAA
511 AGGATATGTTTATACGAGCATCTGAATCTTGTTTAGATTTAATCAGAAATTAATTT-G-GAAAAA
* *
149493 ATAGGAAAAATCAT-ATAAAAAGCGTGAAAAGCTCGCCAATCTTTGTT-GCGTTCGATTATATAT
574 ATAGGAAAAA-CATGATAAAAAGCGTGAAAAGCCCGCCAATCTTT-TTGGCGTTCAATTATATAT
* * * *
149556 TTTTTATGCA-TATTTTGCGAAAAAATTGAGGAAAAAGAATGCTGATTAATTTTTGCAAAATTTT
637 TTTTTAT-AAGTATTTTGCGAAAAAATTGAGGAAAAAGAATGCGGATCAAATTTTGCAAAATTTT
* * * * *
149620 GGCCGAAATCATGTTCTAACCATCACAGTTTCTGGTTGAAAACGTGTTTCGGGGCTCCGGCTTAG
701 AGCCGAAATCATGTACTAACCATCACAGTTTCTGGTTGAAAACGCGTTCCGGGGCTCCGGCTCAG
* *
149685 TTTTGCATGATTTTTGGCGCAGGGAGTCATTGAAATATCTATATTCATCTAATCAAATCTCAGCC
766 TTTTGCATGATTTTTGGCGAAGAGAGTCATTGAAATATCTATATTCATCTAATCAAATCTCAGCC
* * *
149750 ACACTGGATTGAAGGAAATGTTTTTACGAGCATCTTAATCT
831 ACACTGAATTGAAGCAAATGTTTTCACGAGCATCTTAATCT
149791 AAAAATTGAGGAAAAATATTTCGGGTCAATTTTTGCAAAATTTTAGCTGAAATCATGTACTAACC
1 AAAAATTGAGGAAAAATATTTCGGGTCAATTTTTGCAAAATTTTAGCTGAAATCATGTAC-AACC
* * *
149856 ATCACGGTTTTTGGCTGAAAACGCGTTCCGGGGCTCTGGCTCAGTTTTGCATGATTTTTGGCGTA
65 ATCACGGTTTCTGGCTGAAAACGCGTTCCGGGGCTCCGGCTCAGTTTTGCATGATTTTTGGCGCA
* * * *
149921 GAGGCTCATTGAAATATTTATATTCATCTAATCAAATCTCAGCCACATTGGAATTAATGAAATGT
130 GAAG-TCATTAAAATATTTATATTCATCTAATCAAATCTCAGCCACACTGGAATTAAGGAAATGT
* *
149986 TTTGACGAGCATCTTAATCTTGTTTCGATTTAATTAGAACTTAATTTGGAAAAAAATAGGAAAAA
194 TTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAACTTAATTTGGAAAAAAATAGGAAAAA
150051 CCATATTTGAAGCATGAAAATTCCCTTAAATAGTTTTGGCGTTGAATTATATATTTTGTTATGAG
259 CCATATTTGAAGCATGAAAA-TCCCTTAAATAGTTTTGGCGTTGAATTATATATTTT-TTATGAG
** * *
150116 TATTGTGGCAAAAAATTAACGAAAAACGTTTCGTTTCCGTTTTATCAAAATTTTAGCCGAAATCA
322 TATTGTGGCAAAAAATTAACGAAAAATATTTTGTTT-CGTTTTATCAAAATTTTAGCTGAAATCA
* * * *
150181 TGTACTAACCATCACGGTTTCTGGTTGAAAACGCGTTCCGGGGCTCTGGTTCAGTTTTGCATGAT
386 TGTACTAACCATCACGGTTTCTGGCTGAAAACGCGTTTCGGGGCTCCGGATCAGTTTTGCATGAT
* * ** * * *
150246 TTTTGGCGCAGAGAGTCATTGAAATATCTATATTCATCTAATCAAATCTCAA-CCACACTGGATT
451 TTTTAGCGCCGAGA--C--TCCAATATCGATA-T-ATCTAATCAAATCT-AAGCCACATTGGAAT
*
150310 TAAGGA-ACTGTTTTTACGAGCATCTGAATCT
509 TAAGGATA-TGTTTATACGAGCATCTGAATCT
150341 AAAAATTGAG
Statistics
Matches: 1236, Mismatches: 139, Indels: 83
0.85 0.10 0.06
Matches are distributed among these distances:
867 82 0.07
868 27 0.02
869 492 0.40
870 11 0.01
871 32 0.03
872 122 0.10
873 5 0.00
874 1 0.00
876 1 0.00
878 7 0.01
879 190 0.15
880 44 0.04
881 141 0.11
882 24 0.02
883 1 0.00
884 54 0.04
885 2 0.00
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (871 bp):
AAAAATTGAGGAAAAATATTTCGGGTCAATTTTTGCAAAATTTTAGCTGAAATCATGTACAACCA
TCACGGTTTCTGGCTGAAAACGCGTTCCGGGGCTCCGGCTCAGTTTTGCATGATTTTTGGCGCAG
AAGTCATTAAAATATTTATATTCATCTAATCAAATCTCAGCCACACTGGAATTAAGGAAATGTTT
TTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAACTTAATTTGGAAAAAAATAGGAAAAACC
ATATTTGAAGCATGAAAATCCCTTAAATAGTTTTGGCGTTGAATTATATATTTTTTATGAGTATT
GTGGCAAAAAATTAACGAAAAATATTTTGTTTCGTTTTATCAAAATTTTAGCTGAAATCATGTAC
TAACCATCACGGTTTCTGGCTGAAAACGCGTTTCGGGGCTCCGGATCAGTTTTGCATGATTTTTA
GCGCCGAGACTCCAATATCGATATATCTAATCAAATCTAAGCCACATTGGAATTAAGGATATGTT
TATACGAGCATCTGAATCTTGTTTAGATTTAATCAGAAATTAATTTGGAAAAAATAGGAAAAACA
TGATAAAAAGCGTGAAAAGCCCGCCAATCTTTTTGGCGTTCAATTATATATTTTTTATAAGTATT
TTGCGAAAAAATTGAGGAAAAAGAATGCGGATCAAATTTTGCAAAATTTTAGCCGAAATCATGTA
CTAACCATCACAGTTTCTGGTTGAAAACGCGTTCCGGGGCTCCGGCTCAGTTTTGCATGATTTTT
GGCGAAGAGAGTCATTGAAATATCTATATTCATCTAATCAAATCTCAGCCACACTGAATTGAAGC
AAATGTTTTCACGAGCATCTTAATCT
Found at i:149947 original size:215 final size:215
Alignment explanation
Indices: 149576--150005 Score: 630
Period size: 215 Copynumber: 2.0 Consensus size: 215
149566 TATTTTGCGA
* * * *
149576 AAAAATTGAGGAAAAAGAATGCTGATTAATTTTTGCAAAATTTTGGCCGAAATCATGTTCTAACC
1 AAAAATTGAGGAAAAAGAATGCGGATCAATTTTTGCAAAATTTTAGCCGAAATCATGTACTAACC
* * * *
149641 ATCACAGTTTCTGGTTGAAAACGTGTTTCGGGGCTCCGGCTTAGTTTTGCATGATTTTTGGCGCA
66 ATCACAGTTTCTGGCTGAAAACGCGTTCCGGGGCTCCGGCTCAGTTTTGCATGATTTTTGGCGCA
*
149706 GGGAGTCATTGAAATATCTATATTCATCTAATCAAATCTCAGCCACACTGG-ATTGAAGGAAATG
131 GGGACTCATTGAAATATCTATATTCATCTAATCAAATCTCAGCCACACTGGAATT-AAGGAAATG
*
149770 TTTTTACGAGCATCTTAATCT
195 TTTTGACGAGCATCTTAATCT
* * * * *
149791 AAAAATTGAGGAAAAATATTTCGGGTCAATTTTTGCAAAATTTTAGCTGAAATCATGTACTAACC
1 AAAAATTGAGGAAAAAGAATGCGGATCAATTTTTGCAAAATTTTAGCCGAAATCATGTACTAACC
* * * *
149856 ATCACGGTTTTTGGCTGAAAACGCGTTCCGGGGCTCTGGCTCAGTTTTGCATGATTTTTGGCGTA
66 ATCACAGTTTCTGGCTGAAAACGCGTTCCGGGGCTCCGGCTCAGTTTTGCATGATTTTTGGCGCA
* * *
149921 GAGG-CTCATTGAAATATTTATATTCATCTAATCAAATCTCAGCCACATTGGAATTAATGAAATG
131 G-GGACTCATTGAAATATCTATATTCATCTAATCAAATCTCAGCCACACTGGAATTAAGGAAATG
149985 TTTTGACGAGCATCTTAATCT
195 TTTTGACGAGCATCTTAATCT
150006 TGTTTCGATT
Statistics
Matches: 191, Mismatches: 22, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
215 186 0.97
216 5 0.03
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (215 bp):
AAAAATTGAGGAAAAAGAATGCGGATCAATTTTTGCAAAATTTTAGCCGAAATCATGTACTAACC
ATCACAGTTTCTGGCTGAAAACGCGTTCCGGGGCTCCGGCTCAGTTTTGCATGATTTTTGGCGCA
GGGACTCATTGAAATATCTATATTCATCTAATCAAATCTCAGCCACACTGGAATTAAGGAAATGT
TTTGACGAGCATCTTAATCT
Found at i:150304 original size:550 final size:546
Alignment explanation
Indices: 149256--150720 Score: 2072
Period size: 550 Copynumber: 2.7 Consensus size: 546
149246 TTTTGGGCAT
* *
149256 AAATTGATGAAAAATATTTTGGGTCAATTTTTGCAAAATTTTAGCTGAAATCATGTACTAACCAT
1 AAATTGAGGAAAAATATTTCGGGTCAATTTTTGCAAAATTTTAGCTGAAATCATGTACTAACCAT
* * * * *
149321 CACGGTTTCTGGCTGAAAACGCGTTTCGGGGCTCCGGATCAGTTTTGCATGATTTTTAGCGT-GA
66 CACGGTTTTTGGCTGAAAACGCGTTCCGGGGCTCTGGCTCAGTTTTGCATGATTTTTGGCGTAG-
*
149385 AGGCTCATTG-------A-A---ATCTAATCAAATCTAAGCCACATTGGATTTAAGGATATGTTT
130 AGGCTCATTGAAATATTATATTCATCTAATCAAATCTCAGCCACATTGGATTTAA-GATATGTTT
** * *
149439 TTACGAGCATCTGAATCTTGTTTAGATTTAATCGGAAATTAATTTGGAGAAAAAATAGGAAAAAT
194 TTACGAGCATCTGAATCTTGTTTAGATTTAATTAGAACTTAATTTGGA-AAAAAATAGGAAAAAC
*** * * * *** * *
149504 CATATAAAAAGCGTGAAAAGCTCGCCAAT-CTTTGTTGCGTTCG-ATTATATATTTTTTATGCA-
258 CATATTTGAAGCATGAAAATCCCTTAAATAGTTT-TGGCGTT-GAATTATATATTTTTTATG-AG
* * * * * * ** *
149566 TATT-TTGCGAAAAAATTGAGGAAAAA-GAATGCTGATT-AATTTT-TGCAAAATTTTGGCCGAA
320 TATTGTGGC-AAAAAATTAACGAAAAACG-TTTC-GTTTCCGTTTTAT-CAAAATTTTAGCCGAA
* * *
149627 ATCATGTTCTAACCATCACAGTTTCTGGTTGAAAACGTGTTTCGGGGCTCCGGCTTAGTTTTGCA
381 ATCATGTACTAACCATCACAGTTTCTGGTTGAAAACGCGTTCCGGGGCTCCGGCTTAGTTTTGCA
* *
149692 TGATTTTTGGCGCAGGGAGTCATTGAAATATCTATATTCATCTAATCAAATCTCAGCCACACTGG
446 TGATTTTTGGCGCAGAGAGTCATTGAAATATCTATATTCATCTAATCAAATCTCAACCACACTGG
*
149757 ATTGAAGGAAATGTTTTTACGAGCATCTTAATCTAA
511 ATTGAAGGAAATGTTTTTACGAGCATCTGAATCTAA
149793 AAATTGAGGAAAAATATTTCGGGTCAATTTTTGCAAAATTTTAGCTGAAATCATGTACTAACCAT
1 AAATTGAGGAAAAATATTTCGGGTCAATTTTTGCAAAATTTTAGCTGAAATCATGTACTAACCAT
149858 CACGGTTTTTGGCTGAAAACGCGTTCCGGGGCTCTGGCTCAGTTTTGCATGATTTTTGGCGTAGA
66 CACGGTTTTTGGCTGAAAACGCGTTCCGGGGCTCTGGCTCAGTTTTGCATGATTTTTGGCGTAGA
* *
149923 GGCTCATTGAAATATTTATATTCATCTAATCAAATCTCAGCCACATTGGAATTAATGAAATGTTT
131 GGCTCATTGAAATA-TTATATTCATCTAATCAAATCTCAGCCACATTGGATTTAA-GATATGTTT
* * *
149988 TGACGAGCATCTTAATCTTGTTTCGATTTAATTAGAACTTAATTTGGAAAAAAATAGGAAAAACC
194 TTACGAGCATCTGAATCTTGTTTAGATTTAATTAGAACTTAATTTGGAAAAAAATAGGAAAAACC
150053 ATATTTGAAGCATGAAAATTCCCTTAAATAGTTTTGGCGTTGAATTATATATTTTGTTATGAGTA
259 ATATTTGAAGCATGAAAA-TCCCTTAAATAGTTTTGGCGTTGAATTATATATTTT-TTATGAGTA
150118 TTGTGGCAAAAAATTAACGAAAAACGTTTCGTTTCCGTTTTATCAAAATTTTAGCCGAAATCATG
322 TTGTGGCAAAAAATTAACGAAAAACGTTTCGTTTCCGTTTTATCAAAATTTTAGCCGAAATCATG
* *
150183 TACTAACCATCACGGTTTCTGGTTGAAAACGCGTTCCGGGGCTCTGG-TTCAGTTTTGCATGATT
387 TACTAACCATCACAGTTTCTGGTTGAAAACGCGTTCCGGGGCTCCGGCTT-AGTTTTGCATGATT
*
150247 TTTGGCGCAGAGAGTCATTGAAATATCTATATTCATCTAATCAAATCTCAACCACACTGGATTTA
451 TTTGGCGCAGAGAGTCATTGAAATATCTATATTCATCTAATCAAATCTCAACCACACTGGATTGA
*
150312 AGGAACTGTTTTTACGAGCATCTGAATCTAA
516 AGGAAATGTTTTTACGAGCATCTGAATCTAA
**
150343 AAATTGAGGAAAAATATTTCGGGTCAATTTTTGCAAAATTTTAGCTGAAATGTTGTACTAACCAT
1 AAATTGAGGAAAAATATTTCGGGTCAATTTTTGCAAAATTTTAGCTGAAATCATGTACTAACCAT
* * *
150408 CACGGTTTTTAGCTGAAAACGAGTTCCGGGGCT-TCGGCTCAATTTTGCATGATTTTTGGCGTAG
66 CACGGTTTTTGGCTGAAAACGCGTTCCGGGGCTCT-GGCTCAGTTTTGCATGATTTTTGGCGTAG
* * *
150472 AGGCTCATTGAAATATCTATATTCATCTAATCAAATCTCAGCTAGATTGGATTTAAGTATAGGTT
130 AGGCTCATTGAAATAT-TATATTCATCTAATCAAATCTCAGCCACATTGGATTTAAG-ATATGTT
* *
150537 TTTACGAGCATCTGAATATTGTTTAGATTTAATTAGAACTTAATTTGGAAAAAAAAAAGGAAAAA
193 TTTACGAGCATCTGAATCTTGTTTAGATTTAATTAGAACTTAATTTGG-AAAAAAATAGGAAAAA
150602 CCATATTTGAAGCATGAAAATCCCTTAAATAGTTTTGGCGTTGAATTATATATTTTTTATGAGTA
257 CCATATTTGAAGCATGAAAATCCCTTAAATAGTTTTGGCGTTGAATTATATATTTTTTATGAGTA
* * *
150667 TTGTGACCAAAAATTAACGAAAAACTTTTCGTTTCCGTTTTATCAAAATTTTAG
322 TTGTGGCAAAAAATTAACGAAAAACGTTTCGTTTCCGTTTTATCAAAATTTTAG
150721 TTGAAATCGT
Statistics
Matches: 835, Mismatches: 66, Indels: 42
0.89 0.07 0.04
Matches are distributed among these distances:
537 130 0.16
538 1 0.00
545 1 0.00
546 1 0.00
548 31 0.04
549 172 0.21
550 459 0.55
551 40 0.05
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.35
Consensus pattern (546 bp):
AAATTGAGGAAAAATATTTCGGGTCAATTTTTGCAAAATTTTAGCTGAAATCATGTACTAACCAT
CACGGTTTTTGGCTGAAAACGCGTTCCGGGGCTCTGGCTCAGTTTTGCATGATTTTTGGCGTAGA
GGCTCATTGAAATATTATATTCATCTAATCAAATCTCAGCCACATTGGATTTAAGATATGTTTTT
ACGAGCATCTGAATCTTGTTTAGATTTAATTAGAACTTAATTTGGAAAAAAATAGGAAAAACCAT
ATTTGAAGCATGAAAATCCCTTAAATAGTTTTGGCGTTGAATTATATATTTTTTATGAGTATTGT
GGCAAAAAATTAACGAAAAACGTTTCGTTTCCGTTTTATCAAAATTTTAGCCGAAATCATGTACT
AACCATCACAGTTTCTGGTTGAAAACGCGTTCCGGGGCTCCGGCTTAGTTTTGCATGATTTTTGG
CGCAGAGAGTCATTGAAATATCTATATTCATCTAATCAAATCTCAACCACACTGGATTGAAGGAA
ATGTTTTTACGAGCATCTGAATCTAA
Found at i:150497 original size:215 final size:215
Alignment explanation
Indices: 150161--150553 Score: 594
Period size: 215 Copynumber: 1.8 Consensus size: 215
150151 TCCGTTTTAT
* * *
150161 CAAAATTTTAGCCGAAATCATGTACTAACCATCACGGTTTCTGGTTGAAAACGCGTTCCGGGGCT
1 CAAAATTTTAGCCGAAATCATGTACTAACCATCACGGTTTCTAGCTGAAAACGAGTTCCGGGGCT
* *
150226 CTGGTTCAGTTTTGCATGATTTTTGGCGCAGAGAGTCATTGAAATATCTATATTCATCTAATCAA
66 CTGGCTCAATTTTGCATGATTTTTGGCGCAGAGAGTCATTGAAATATCTATATTCATCTAATCAA
*
150291 ATCTCAACCACACTGGATTTAAGGA-ACTGTTTTTACGAGCATCTGAATCTAAAAATTGAGGAAA
131 ATCTCAACCACACTGGATTTAAGGATA-GGTTTTTACGAGCATCTGAATCTAAAAATTGAGGAAA
150355 AATATTTCGGGTCAATTTTTG
195 AATATTTCGGGTCAATTTTTG
* ** *
150376 CAAAATTTTAGCTGAAATGTTGTACTAACCATCACGGTTTTTAGCTGAAAACGAGTTCCGGGGCT
1 CAAAATTTTAGCCGAAATCATGTACTAACCATCACGGTTTCTAGCTGAAAACGAGTTCCGGGGCT
*
150441 -TCGGCTCAATTTTGCATGATTTTTGGCGTAGAG-GCTCATTGAAATATCTATATTCATCTAATC
66 CT-GGCTCAATTTTGCATGATTTTTGGCGCAGAGAG-TCATTGAAATATCTATATTCATCTAATC
* * * * *
150504 AAATCTCAGCTAGATTGGATTTAAGTATAGGTTTTTACGAGCATCTGAAT
129 AAATCTCAACCACACTGGATTTAAGGATAGGTTTTTACGAGCATCTGAAT
150554 ATTGTTTAGA
Statistics
Matches: 159, Mismatches: 16, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
214 2 0.01
215 156 0.98
216 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (215 bp):
CAAAATTTTAGCCGAAATCATGTACTAACCATCACGGTTTCTAGCTGAAAACGAGTTCCGGGGCT
CTGGCTCAATTTTGCATGATTTTTGGCGCAGAGAGTCATTGAAATATCTATATTCATCTAATCAA
ATCTCAACCACACTGGATTTAAGGATAGGTTTTTACGAGCATCTGAATCTAAAAATTGAGGAAAA
ATATTTCGGGTCAATTTTTG
Found at i:151784 original size:544 final size:544
Alignment explanation
Indices: 150753--152283 Score: 2105
Period size: 544 Copynumber: 2.8 Consensus size: 544
150743 GGCCCCAACA
* * * *
150753 CAGTTTTGCATGATTTTTGGCGCCGCGACTCCTTGAAATATCTATATTCATCTAATCAAATCTCA
1 CAGTTTTGCATGATTTTTGGCGCAGAGGCTCATTGAAATATCTATATTCATCTAATCAAATCTCA
* * * * * *
150818 TCCACATTGGAATTAAGGATATGTTTTTACGAGCAT-TTGAATCTTGTTTCGATTTAATCAGAAA
66 GCCAGA-T-GATTTAAGGAAATGTTTTTACGAGCATCTT-AATCTTGTTTCGATTTAATTAGAAC
* *
150882 TTAATATGG--AAAAAATAGGAAAAACAATATTAGAAGCGTGAAAATCTCGCCAATCTTTTTAGC
128 TTAATTTGGAAAAAAAATAGGAAAAACAATATTAGAAGCGTGAAAATCCCGCCAATCTTTTT-GC
* * * * * *
150945 GTTCAATTATATATTTTTTATGCGTATTTTGGGCAAAAATGAGGAAAAATAGTTTCGGGTCAAAT
192 GTTCGATTATATATTTTTTATGCATATTTTGGG-AAAATTGAGGAAAAATA-ATTCGGATCAATT
* * * * *
151010 TTTGCAAAATTTTAGCCGAAATCAAGTACTAACCATCACGGTTTCTGTTTGAAAACGCGTTCCGC
255 TTTGCAAAATTTTAGCCGAAATCATGTACTAACCATCACAGTTTCTGATTGAAAACGCGTTTCGG
* * * *
151075 GGCTCCGGCTCAGTTTTGCATGATTTTTGGCGAAGAGAGGCATTGAAATATCTATATTTATCTAA
320 GGCTCCAGCTCAGTTTTGCATGATTTTTGGCGCAGAGAGTCATTGAAATATCTATATTCATCTAA
* *
151140 TCAAATCTAATCCACACTGGATTGAAGGAAATGTTTTTACGAGCATCTTAATCTAAAAATTGAGG
385 TCAAATCTCATCCACACTGGATTGAAGGAAATGTTTTTACGAGCATCTGAATCTAAAAATTGAGG
* *
151205 AAAAATATTTCGGGTCAATTTTTGCAAAATTTTAGCTGAGATCATATATTAACCATCACAGTATT
450 AAAAATATTTCGGGTCAATTTTTGCAAAATTTTAGCTGAAATCATATACTAACCATCACAGTATT
151270 TGGCTGAAAACGCGTTCCGGGGCTCCGGCT
515 TGGCTGAAAACGCGTTCCGGGGCTCCGGCT
*
151300 CAGTTTTGCATGATTTTTGGCGTAGAGGCTCATTGAAATATCTATATTCATCTAATCAAATCTCA
1 CAGTTTTGCATGATTTTTGGCGCAGAGGCTCATTGAAATATCTATATTCATCTAATCAAATCTCA
151365 GCCAGATGATTTAAGGAAATGTTTTTACGAGCATCTTAATCTTGTTTCGATTTAATTAGAACTTA
66 GCCAGATGATTTAAGGAAATGTTTTTACGAGCATCTTAATCTTGTTTCGATTTAATTAGAACTTA
* * *
151430 ATTTGGAAAAAAAATAGG-AAAACCATATTAAAAGCGTGAAAAGCCCGCCAATCTTGTTTGCGTT
131 ATTTGGAAAAAAAATAGGAAAAACAATATTAGAAGCGTGAAAATCCCGCCAATCTT-TTTGCGTT
* *
151494 CGATTATATATTTTTTATGCATATTTTGGGAAAATTGAGGAAAAAGAATTCGGATCAATTTTTGT
195 CGATTATATATTTTTTATGCATATTTTGGGAAAATTGAGGAAAAATAATTCGGATCAATTTTTGC
* *
151559 AAAATTTTTGCCGAAATCATGTACTAACCATCACAGTTTCTGGTTGAAAACGCGTTTCGGGGCTC
260 AAAATTTTAGCCGAAATCATGTACTAACCATCACAGTTTCTGATTGAAAACGCGTTTCGGGGCTC
151624 CAGCTCAGTTTTGCATGATTTTTGGCGCAGAGAGTCATTGAAATATCTATATTCATCTAATCAAA
325 CAGCTCAGTTTTGCATGATTTTTGGCGCAGAGAGTCATTGAAATATCTATATTCATCTAATCAAA
* *
151689 TCTCAGCCACACTGGATTGAAGGAAATGTTTTTACGAGCATCTGAATCTAAAAATTGATGAAAAA
390 TCTCATCCACACTGGATTGAAGGAAATGTTTTTACGAGCATCTGAATCTAAAAATTGAGGAAAAA
* *
151754 TATTTCGGGTCAATTTTTGCAAAATTTTAGCTGAAATCATGTACTAACCATCACAGTTTTTGGCT
455 TATTTCGGGTCAATTTTTGCAAAATTTTAGCTGAAATCATATACTAACCATCACAGTATTTGGCT
151819 GAAAACGCGTTCCGGGGCTCCGGCT
520 GAAAACGCGTTCCGGGGCTCCGGCT
*
151844 CAGTTTTGCATGATTTTTGGCGCAAAGAG-TCATTGAAATATCTATATTCATCTAATCAAATCTC
1 CAGTTTTGCATGATTTTTGGCGCAGAG-GCTCATTGAAATATCTATATTCATCTAATCAAATCTC
** *
151908 AGCGTGATGATTTAAGGAAATGTTTTGACGAGCATCTTAATCTTGTTTCGATTTAATTAGAACTT
65 AGCCAGATGATTTAAGGAAATGTTTTTACGAGCATCTTAATCTTGTTTCGATTTAATTAGAACTT
* * * * *** * *
151973 AATTTGGAAAAATAATAGGAAAAACGATATTTGAAGCATG-AAATCCCTTAAATAGTTTTGGCGT
130 AATTTGGAAAAAAAATAGGAAAAACAATATTAGAAGCGTGAAAATCCCGCCAAT-CTTTTTGCGT
* * * * * ** **
152037 T-GAATTATATATTTTTTATG-AGTATTGTGGCCAAAAATTAACGAAAAACTTATT-GTTTCCGT
194 TCG-ATTATATATTTTTTATGCA-TATTTTGG--GAAAATTGAGGAAAAA-TAATTCGGATCAAT
** *** * *
152099 TTTAT-CAAAATTTTAGTTGAAATCATGGGTTAACCATCACAGTTTTTGACTGAAAACGCG-TTC
254 TTT-TGCAAAATTTTAGCCGAAATCATGTACTAACCATCACAGTTTCTGATTGAAAACGCGTTTC
* * * * * *
152162 AGGGGCCCCAACACAGTTTTGCATGATTTTTGGCGCGGAGACTCCTTGAAATATCTATATTCATC
318 -GGGGCTCCAGCTCAGTTTTGCATGATTTTTGGCGCAGAGAGTCATTGAAATATCTATATTCATC
* *
152227 TAATCAAATCTCATCCACATTGGAATT-AAGGATATGTTTTTACGAGCATCTGAATCT
382 TAATCAAATCTCATCCACACTGG-ATTGAAGGAAATGTTTTTACGAGCATCTGAATCT
152284 TGTTTCGATT
Statistics
Matches: 882, Mismatches: 87, Indels: 31
0.88 0.09 0.03
Matches are distributed among these distances:
543 2 0.00
544 461 0.52
545 93 0.11
546 242 0.27
547 84 0.10
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (544 bp):
CAGTTTTGCATGATTTTTGGCGCAGAGGCTCATTGAAATATCTATATTCATCTAATCAAATCTCA
GCCAGATGATTTAAGGAAATGTTTTTACGAGCATCTTAATCTTGTTTCGATTTAATTAGAACTTA
ATTTGGAAAAAAAATAGGAAAAACAATATTAGAAGCGTGAAAATCCCGCCAATCTTTTTGCGTTC
GATTATATATTTTTTATGCATATTTTGGGAAAATTGAGGAAAAATAATTCGGATCAATTTTTGCA
AAATTTTAGCCGAAATCATGTACTAACCATCACAGTTTCTGATTGAAAACGCGTTTCGGGGCTCC
AGCTCAGTTTTGCATGATTTTTGGCGCAGAGAGTCATTGAAATATCTATATTCATCTAATCAAAT
CTCATCCACACTGGATTGAAGGAAATGTTTTTACGAGCATCTGAATCTAAAAATTGAGGAAAAAT
ATTTCGGGTCAATTTTTGCAAAATTTTAGCTGAAATCATATACTAACCATCACAGTATTTGGCTG
AAAACGCGTTCCGGGGCTCCGGCT
Found at i:151895 original size:215 final size:213
Alignment explanation
Indices: 151524--151950 Score: 674
Period size: 215 Copynumber: 2.0 Consensus size: 213
151514 ATATTTTGGG
* *
151524 AAAATTGAGGAAAAAGAATTCGGATCAATTTTTGTAAAATTTTTGCCGAAATCATGTACTAACCA
1 AAAATTGAGGAAAAAGAATTCGGATCAATTTTTGCAAAATTTTAGCCGAAATCATGTACTAACCA
* * *
151589 TCACAGTTTCTGGTTGAAAACGCGTTTCGGGGCTCCAGCTCAGTTTTGCATGATTTTTGGCGCAG
66 TCACAGTTTCTGGCTGAAAACGCGTTCCGGGGCTCCAGCTCAGTTTTGCATGATTTTTGGCGCAA
151654 AGAGTCATTGAAATATCTATATTCATCTAATCAAATCTCAGCCACACTGGATTGAAGGAAATGTT
131 AGAGTCATTGAAATATCTATATTCATCTAATCAAATCTCAGCCACA-T-GATTGAAGGAAATGTT
*
151719 TTTACGAGCATCTGAATCTA
194 TTGACGAGCATCTGAATCTA
* * * * *
151739 AAAATTGATGAAAAATATTTCGGGTCAATTTTTGCAAAATTTTAGCTGAAATCATGTACTAACCA
1 AAAATTGAGGAAAAAGAATTCGGATCAATTTTTGCAAAATTTTAGCCGAAATCATGTACTAACCA
* *
151804 TCACAGTTTTTGGCTGAAAACGCGTTCCGGGGCTCCGGCTCAGTTTTGCATGATTTTTGGCGCAA
66 TCACAGTTTCTGGCTGAAAACGCGTTCCGGGGCTCCAGCTCAGTTTTGCATGATTTTTGGCGCAA
*** *
151869 AGAGTCATTGAAATATCTATATTCATCTAATCAAATCTCAGCGTGATGATTTAAGGAAATGTTTT
131 AGAGTCATTGAAATATCTATATTCATCTAATCAAATCTCAGCCACATGATTGAAGGAAATGTTTT
*
151934 GACGAGCATCTTAATCT
196 GACGAGCATCTGAATCT
151951 TGTTTCGATT
Statistics
Matches: 194, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
213 32 0.16
214 1 0.01
215 161 0.83
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (213 bp):
AAAATTGAGGAAAAAGAATTCGGATCAATTTTTGCAAAATTTTAGCCGAAATCATGTACTAACCA
TCACAGTTTCTGGCTGAAAACGCGTTCCGGGGCTCCAGCTCAGTTTTGCATGATTTTTGGCGCAA
AGAGTCATTGAAATATCTATATTCATCTAATCAAATCTCAGCCACATGATTGAAGGAAATGTTTT
GACGAGCATCTGAATCTA
Found at i:152486 original size:331 final size:331
Alignment explanation
Indices: 151738--152614 Score: 1120
Period size: 331 Copynumber: 2.6 Consensus size: 331
151728 ATCTGAATCT
* *
151738 AAAAATTGATGAAAAATATTTCGGGTCAATTTTTGCAAAATTTTAGCTGAAATCATGTACTAACC
1 AAAAATTGACGAAAAATATTTCGGGTCAAATTTTGCAAAATTTTAGCTGAAATCATGTACTAACC
* *
151803 ATCACAGTTTTTGGCTGAAAACGCGTTCCGGGGCTCCGGCTCAGTTTTGCATGATTTTTGGCGCA
66 ATCACAGTTTTTGACTGAAAACGCGTTCCGGGGCTCCGACTCAGTTTTGCATGATTTTTGGCGCA
* * ***
151868 AAGAGTCATTGAAATATCTATATTCATCTAATCAAATCTCAGCGTGAT-GATTTAAGGAAATGTT
131 GAGACTCATTGAAATATCTATATTCATCTAATCAAATCTCAGCCACATGGATTTAAGG-AATGTT
* * * *
151932 TTGACGAGCATCTTAATCTTGTTTCGATTTAATTAGAACTTAATTTGGAAAAATAATAGGAAAAA
195 TTTACGAGCATCTGAATCTTGTTTCGATTTAATCAGAAATTAATTTGGAAAAATAATAGGAAAAA
* * * ** *
151997 CGATATTTGAAGCATGAAATCCCTTAAATAGTTTTGGCGTTGAATTATATATTTTTTATGAGTAT
260 CAATATTAGAAGCATGAAAGCCCGCAAATAGTTTTGGCGTTCAATTATATATTTTTTATGAGTAT
152062 TGTGGCC
325 TGTGGCC
* ** ** * * ***
152069 AAAAATTAACGAAAAACT-TATT-GTTTC-CGTTTTATCAAAATTTTAGTTGAAATCATGGGTTA
1 AAAAATTGACGAAAAA-TAT-TTCGGGTCAAATTTT-GCAAAATTTTAGCTGAAATCATGTACTA
* * * *
152131 ACCATCACAGTTTTTGACTGAAAACGCGTTCAGGGGCCCCAACACAGTTTTGCATGATTTTTGGC
63 ACCATCACAGTTTTTGACTGAAAACGCGTTCCGGGGCTCCGACTCAGTTTTGCATGATTTTTGGC
* * * *
152196 GCGGAGACTCCTTGAAATATCTATATTCATCTAATCAAATCTCATCCACATTGGAATTAAGGATA
128 GCAGAGACTCATTGAAATATCTATATTCATCTAATCAAATCTCAGCCACA-TGGATTTAAGGA-A
152261 TGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATCAGAAATTAATTTGG-AAAA-AATAGGA
191 TGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATCAGAAATTAATTTGGAAAAATAATAGGA
* * ** *
152324 AAAACAATATTAGAAGCGTGAAAAGCCCGCCAATCTTTTTGGCGTTCCATTATATATTTTTTATG
256 AAAACAATATTAGAAGCATG-AAAGCCCGCAAATAGTTTTGGCGTTCAATTATATATTTTTTATG
* * *
152389 GGTATTTTGGGC
320 AGTATTGTGGCC
* *
152401 AAAAATTGAGGAAAAATATTTCGGGTCAAATTTTGCAAAATTTTAGCCGAAATCATGTACTAACC
1 AAAAATTGACGAAAAATATTTCGGGTCAAATTTTGCAAAATTTTAGCTGAAATCATGTACTAACC
* ** * * * *
152466 ATCA-AGTTTCTGTTTGAAAACGCGTTCCGGGGCTCTGATTTAGTTTTGCATGATTTTTGGCGTA
66 ATCACAGTTTTTGACTGAAAACGCGTTCCGGGGCTCCGACTCAGTTTTGCATGATTTTTGGCGCA
* *
152530 GAGATTCATTGAAATATATATATTCATCTAATCAAATCTCAGCCACACTGGATTTAAGGAACTGT
131 GAGACTCATTGAAATATCTATATTCATCTAATCAAATCTCAGCCACA-TGGATTTAAGGAA-TGT
152595 TTTTACGAGCATCTGAATCT
194 TTTTACGAGCATCTGAATCT
152615 AAAAATTTAG
Statistics
Matches: 461, Mismatches: 74, Indels: 22
0.83 0.13 0.04
Matches are distributed among these distances:
330 5 0.01
331 294 0.64
332 101 0.22
333 61 0.13
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (331 bp):
AAAAATTGACGAAAAATATTTCGGGTCAAATTTTGCAAAATTTTAGCTGAAATCATGTACTAACC
ATCACAGTTTTTGACTGAAAACGCGTTCCGGGGCTCCGACTCAGTTTTGCATGATTTTTGGCGCA
GAGACTCATTGAAATATCTATATTCATCTAATCAAATCTCAGCCACATGGATTTAAGGAATGTTT
TTACGAGCATCTGAATCTTGTTTCGATTTAATCAGAAATTAATTTGGAAAAATAATAGGAAAAAC
AATATTAGAAGCATGAAAGCCCGCAAATAGTTTTGGCGTTCAATTATATATTTTTTATGAGTATT
GTGGCC
Found at i:152798 original size:212 final size:214
Alignment explanation
Indices: 152401--152826 Score: 637
Period size: 212 Copynumber: 2.0 Consensus size: 214
152391 TATTTTGGGC
152401 AAAAATTGAGGAAAAATATTTCGGGTCAAATTTTGCAAAATTTTAGCCGAAATCATGTACTAACC
1 AAAAATTGAGGAAAAATATTTCGGGTCAAATTTTGCAAAATTTTAGCCGAAATCATGTACTAACC
* * * * *
152466 ATCAAGTTTCTGTTTGAAAACGCGTTCCGGGGCTCTGATTTAGTTTTGCATGATTTTTGGCGTAG
66 ATCAAGTTTCTGTCTGAAAACGCGTTCCGGGGCTCCGACTCAGTTTTGCATGATTTTTGGCGCAG
* * *
152531 AGATTCATTGAAATATATATATTCATCTAATCAAATCTCAGCCACACTGGATTTAAGGAACTGTT
131 AGAATCATTGAAATATATATATTCATCTAATCAAATCTCAGCCACACTAGATTTAAGGAAATGTT
152596 TTTACGAGCATCTGAATCT
196 TTTACGAGCATCTGAATCT
* * * *
152615 AAAAATTTAGGAAAAATATTTCGGGTCAATTTTTGCAAAA-TTTATCTGAAAT-ATTGTACTAAC
1 AAAAATTGAGGAAAAATATTTCGGGTCAAATTTTGCAAAATTTTAGCCGAAATCA-TGTACTAAC
* * *
152678 CATCACGGTTTTTAG-CTGAAAACGCGTTCC-GGGCTCCGGCTCAGTTTTGCATGA-TTTTGGCG
65 CATCA-AGTTTCT-GTCTGAAAACGCGTTCCGGGGCTCCGACTCAGTTTTGCATGATTTTTGGCG
*
152740 CAGAGAATCATTGAAATATCTATATTCATCTAATCAAATCTCAGCCACACTAGATTTAAGGAAAT
128 CAGAGAATCATTGAAATATATATATTCATCTAATCAAATCTCAGCCACACTAGATTTAAGGAAAT
*
152805 GTTTTTTCGAGCATCTGAATCT
193 GTTTTTACGAGCATCTGAATCT
152827 TGTCTTGATT
Statistics
Matches: 192, Mismatches: 17, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
212 90 0.47
213 44 0.23
214 57 0.30
215 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (214 bp):
AAAAATTGAGGAAAAATATTTCGGGTCAAATTTTGCAAAATTTTAGCCGAAATCATGTACTAACC
ATCAAGTTTCTGTCTGAAAACGCGTTCCGGGGCTCCGACTCAGTTTTGCATGATTTTTGGCGCAG
AGAATCATTGAAATATATATATTCATCTAATCAAATCTCAGCCACACTAGATTTAAGGAAATGTT
TTTACGAGCATCTGAATCT
Found at i:152961 original size:876 final size:877
Alignment explanation
Indices: 151229--153493 Score: 3611
Period size: 876 Copynumber: 2.6 Consensus size: 877
151219 TCAATTTTTG
* * * * * * * *
151229 CAAAATTTTAGCTGAGATCATATATTAACCATCACAGTATTTGGCTGAAAACGCGTTCCGGGGCT
1 CAAAATTTTAGTTGAAATCATGTGTTAACCATCACAGTTTTTGACTGAAAACGCGTTCAGGGGCC
* * *
151294 CCGGCTCAGTTTTGCATGATTTTTGGCGTAGAGGCTCATTGAAATATCTATATTCATCTAATCAA
66 CCGGCACAGTTTTGCATGATTTTTGGCGCAGAGACTCATTGAAATATCTATATTCATCTAATCAA
* * * * * *
151359 ATCTCAGCCAGA-T-GATTTAAGGAAATGTTTTTACGAGCATCTTAATCTTGTTTCGATTTAATT
131 ATCTCATCCACATTGGAATTAAGGATATGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATC
* * *
151422 AGAACTTAATTTGGAAAAAAAATAGG-AAAACCATATTAAAAGCGTGAAAAGCCCGCCAATCTTG
196 AGAAATTAATTTGG--AAAAAATAGGAAAAACAATATTAGAAGCGTGAAAAGCCCGCCAATCTT-
* * * *
151486 TTT-GCGTTCGATTATATATTTTTTATGCATATTTTGGG--AAAATTGAGGAAAAAGAATTCGGA
258 TTTGGCGTTCAATTATATATTTTTTATGCATATTTTGGGCAAAAATTGAGGAAAAATATTTCGGG
* * * *
151548 TCAATTTTTGTAAAATTTTTGCCGAAATCATGTACTAACCATCACAGTTTCTGGTTGAAAACGCG
323 TCAAATTTTGCAAAATTTTAGCCGAAATCATGTACTAACCATCACAGTTTCTGTTTGAAAACGCG
* * *
151613 TTTCGGGGCTCCAGCTCAGTTTTGCATGATTTTTGGCGCAGAGAGTCATTGAAATATCTATATTC
388 TTCCGGGGCTCGA-CTCAGTTTTGCATGATTTTTGGCGAAGAGAGTCATTGAAATATCTATATTC
151678 ATCTAATCAAATCTCAGCCACACTGGATTGAAGGAAATGTTTTTACGAGCATCTGAATCTAAAAA
452 ATCTAATCAAATCTCAGCCACACTGGATTGAAGGAAATGTTTTTACGAGCATCTGAATCTAAAAA
*
151743 TTGATGAAAAATATTTCGGGTCAATTTTTGCAAAATTTTAGCTGAAATCATGTACTAACCATCAC
517 TTGAGGAAAAATATTTCGGGTCAATTTTTGCAAAATTTTAGCTGAAATCATGTACTAACCATCAC
* *
151808 AGTTTTTGGCTGAAAACGCGTTCCGGGGCTCCGGCTCAGTTTTGCATGATTTTTGGCGCAAAGAG
582 AGTTTTTAGCTGAAAACGCGTTCCGGGGCTCCGGCTCAGTTTTGCATGATTTTTGGCGCAAAGAA
***
151873 TCATTGAAATATCTATATTCATCTAATCAAATCTCAGCGTGATGATTTAAGGAAATGTTTTGACG
647 TCATTGAAATATCTATATTCATCTAATCAAATCTCAGCCACATGATTTAAGGAAATGTTTTGACG
* * *
151938 AGCATCTTAATCTTGTTTCGATTTAATTAGAACTTAATTTGGAAAAATAATAGGAAAAACGATAT
712 AGCATCTGAATCTTGTTTCGATTTAATTAGAACTTAATTTGGAAAAATAAAAGGAAAAACCATAT
*
152003 TTGAAGCATGAAATCCCTTAAATAGTTTTGGCGTTGAATTATATATTTTTTATGAGTATTGTGGC
777 TTGAAGCATGAAATCCCTTAAATAGTTTTGGCGTTGAATTATATATTTTTTATGAGTACTGTGGC
152068 CAAAAATTAACGAAAAACTTATTGTTTCCGTTTTAT
842 CAAAAATTAACGAAAAACTTATTGTTTCCGTTTTAT
*
152104 CAAAATTTTAGTTGAAATCATGGGTTAACCATCACAGTTTTTGACTGAAAACGCGTTCAGGGGCC
1 CAAAATTTTAGTTGAAATCATGTGTTAACCATCACAGTTTTTGACTGAAAACGCGTTCAGGGGCC
** * *
152169 CCAACACAGTTTTGCATGATTTTTGGCGCGGAGACTCCTTGAAATATCTATATTCATCTAATCAA
66 CCGGCACAGTTTTGCATGATTTTTGGCGCAGAGACTCATTGAAATATCTATATTCATCTAATCAA
152234 ATCTCATCCACATTGGAATTAAGGATATGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATC
131 ATCTCATCCACATTGGAATTAAGGATATGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATC
152299 AGAAATTAATTTGGAAAAAATAGGAAAAACAATATTAGAAGCGTGAAAAGCCCGCCAATCTTTTT
196 AGAAATTAATTTGGAAAAAATAGGAAAAACAATATTAGAAGCGTGAAAAGCCCGCCAATCTTTTT
* **
152364 GGCGTTCCATTATATATTTTTTATGGGTATTTTGGGCAAAAATTGAGGAAAAATATTTCGGGTCA
261 GGCGTTCAATTATATATTTTTTATGCATATTTTGGGCAAAAATTGAGGAAAAATATTTCGGGTCA
152429 AATTTTGCAAAATTTTAGCCGAAATCATGTACTAACCATCA-AGTTTCTGTTTGAAAACGCGTTC
326 AATTTTGCAAAATTTTAGCCGAAATCATGTACTAACCATCACAGTTTCTGTTTGAAAACGCGTTC
* * * * *
152493 CGGGGCTCTGATTTAGTTTTGCATGATTTTTGGCGTAGAGATTCATTGAAATATATATATTCATC
391 CGGGGCTC-GACTCAGTTTTGCATGATTTTTGGCGAAGAGAGTCATTGAAATATCTATATTCATC
* * *
152558 TAATCAAATCTCAGCCACACTGGATTTAAGGAACTGTTTTTACGAGCATCTGAATCTAAAAATTT
455 TAATCAAATCTCAGCCACACTGGATTGAAGGAAATGTTTTTACGAGCATCTGAATCTAAAAATTG
* *
152623 AGGAAAAATATTTCGGGTCAATTTTTGCAAAA-TTTATCTGAAAT-ATTGTACTAACCATCACGG
520 AGGAAAAATATTTCGGGTCAATTTTTGCAAAATTTTAGCTGAAATCA-TGTACTAACCATCACAG
*
152686 TTTTTAGCTGAAAACGCGTTCC-GGGCTCCGGCTCAGTTTTGCATGA-TTTTGGCGCAGAGAATC
584 TTTTTAGCTGAAAACGCGTTCCGGGGCTCCGGCTCAGTTTTGCATGATTTTTGGCGCAAAGAATC
**
152749 ATTGAAATATCTATATTCATCTAATCAAATCTCAGCCACACTAGATTTAAGGAAATGTTTTTTCG
649 ATTGAAATATCTATATTCATCTAATCAAATCTCAGCCACA-T-GATTTAAGGAAATGTTTTGACG
152814 AGCATCTGAATCTTGTCTT-GATTTAATTAGAACTTAATTTGGAAAAA-AAAAGGAAAAACCATA
712 AGCATCTGAATCTTGT-TTCGATTTAATTAGAACTTAATTTGGAAAAATAAAAGGAAAAACCATA
152877 TTTGAAGCATGAAAATCCCTTAAATAGTTTTGGCGTTGAATTATATATTTTTTATGAGTACTGTG
776 TTTGAAGCATG-AAATCCCTTAAATAGTTTTGGCGTTGAATTATATATTTTTTATGAGTACTGTG
*
152942 GCCAAAAATTAATGAAAAACTTATTGTTTCCGTTTTAT
840 GCCAAAAATTAACGAAAAACTTATTGTTTCCGTTTTAT
* * *
152980 CAAAATTTTAGTTGAAATCGTGTGTTAACCATCACGGTTTCTGACTGAAAACGCGTTCAGGGGCC
1 CAAAATTTTAGTTGAAATCATGTGTTAACCATCACAGTTTTTGACTGAAAACGCGTTCAGGGGCC
*
153045 CCGGCACAGTTTTGCATGATTTTTGGCGCAGAGACTCTTTGAAATATCTATATTCATCTAATCAA
66 CCGGCACAGTTTTGCATGATTTTTGGCGCAGAGACTCATTGAAATATCTATATTCATCTAATCAA
* * *
153110 ATCACATCCACATTGGAATTAAGGATATGTTTTTATGAGCATCTGAATCTTGTTTCGGTTTAATC
131 ATCTCATCCACATTGGAATTAAGGATATGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATC
*
153175 AGAAATTAATTTGGAAAAAATAGGAAAAACAATATTAGAAGCGTGAAAAGCCCGCTAATCTTTTT
196 AGAAATTAATTTGGAAAAAATAGGAAAAACAATATTAGAAGCGTGAAAAGCCCGCCAATCTTTTT
* *
153240 GGCGTTCAATTATATATTTTTTATGCATATTTTGGGCAAAAATTAAGGAAAAATATTTAGGGTCA
261 GGCGTTCAATTATATATTTTTTATGCATATTTTGGGCAAAAATTGAGGAAAAATATTTCGGGTCA
153305 AATTTTGCAAAATTTTAGCCGAAATCATGTACGTTAACCATCACAGTTTCTGTTTGAAAACGCGT
326 AATTTTGCAAAATTTTAGCCGAAATCATGTAC--TAACCATCACAGTTTCTGTTTGAAAACGCGT
* * * * *
153370 TCAGGGCCTCCGGCTCAGGTTTGCATGATTTTTGGCGAAGAGAGTCATTGAAATATCTATATTTA
389 TCCGGGGCT-CGACTCAGTTTTGCATGATTTTTGGCGAAGAGAGTCATTGAAATATCTATATTCA
*
153435 TCTAATCAAATCTCATCCACACTGGATTGAAGGAAATGTTTTTACGAGCATCTGAATCT
453 TCTAATCAAATCTCAGCCACACTGGATTGAAGGAAATGTTTTTACGAGCATCTGAATCT
153494 TGTTTCAATT
Statistics
Matches: 1283, Mismatches: 91, Indels: 28
0.92 0.06 0.02
Matches are distributed among these distances:
874 52 0.04
875 188 0.15
876 608 0.47
877 232 0.18
878 72 0.06
879 130 0.10
880 1 0.00
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (877 bp):
CAAAATTTTAGTTGAAATCATGTGTTAACCATCACAGTTTTTGACTGAAAACGCGTTCAGGGGCC
CCGGCACAGTTTTGCATGATTTTTGGCGCAGAGACTCATTGAAATATCTATATTCATCTAATCAA
ATCTCATCCACATTGGAATTAAGGATATGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATC
AGAAATTAATTTGGAAAAAATAGGAAAAACAATATTAGAAGCGTGAAAAGCCCGCCAATCTTTTT
GGCGTTCAATTATATATTTTTTATGCATATTTTGGGCAAAAATTGAGGAAAAATATTTCGGGTCA
AATTTTGCAAAATTTTAGCCGAAATCATGTACTAACCATCACAGTTTCTGTTTGAAAACGCGTTC
CGGGGCTCGACTCAGTTTTGCATGATTTTTGGCGAAGAGAGTCATTGAAATATCTATATTCATCT
AATCAAATCTCAGCCACACTGGATTGAAGGAAATGTTTTTACGAGCATCTGAATCTAAAAATTGA
GGAAAAATATTTCGGGTCAATTTTTGCAAAATTTTAGCTGAAATCATGTACTAACCATCACAGTT
TTTAGCTGAAAACGCGTTCCGGGGCTCCGGCTCAGTTTTGCATGATTTTTGGCGCAAAGAATCAT
TGAAATATCTATATTCATCTAATCAAATCTCAGCCACATGATTTAAGGAAATGTTTTGACGAGCA
TCTGAATCTTGTTTCGATTTAATTAGAACTTAATTTGGAAAAATAAAAGGAAAAACCATATTTGA
AGCATGAAATCCCTTAAATAGTTTTGGCGTTGAATTATATATTTTTTATGAGTACTGTGGCCAAA
AATTAACGAAAAACTTATTGTTTCCGTTTTAT
Found at i:153494 original size:334 final size:332
Alignment explanation
Indices: 152615--154007 Score: 1679
Period size: 334 Copynumber: 4.2 Consensus size: 332
152605 ATCTGAATCT
* * *
152615 AAAAATTTAGGAAAAATATTTCGGGTCAATTTTTGCAAAA-TTTATCTGAAAT-ATTGTAC-TAA
1 AAAAATTAAGGAAAAATATTTCGGGTCAAATTTTGCAAAATTTTAGCTGAAATCA-TGTACGTAA
* * *
152677 CCATCACGGTTTTTAGCTGAAAACGCGTTCCGGG-CTCCGGCTCAGTTTTGCATGA-TTTTGGCG
65 CCATCACAGTTTCT-GCTGAAAACGCGTTCAGGGCCTCCGGCTCAGTTTTGCATGATTTTTGGCG
* *
152740 CAGAGAATCATTGAAATATCTATATTCATCTAATCAAATCTCAGCCACACTAGATTTAAGGAAAT
129 CAGAGAGTCATTGAAATATCTATATTCATCTAATCAAATCTCAGCCACACTGGATTTAAGGAAAT
* * * *
152805 GTTTTTTCGAGCATCTGAATCTTGTCTT-GATTTAATTAGAACTTAATTTGGAAAAAAAAAGGAA
194 GTTTTTACGAGCATCTGAATCTTGT-TTCGATTTAATCAGAAATTAATTTGG-AAAAAATAGGAA
* * * * * * *
152869 AAACCATATTTGAAGCATGAAAATCCC-TTAAATAGTTTTGGCGTTGAATTATATATTTTTTATG
257 AAACAATATTAGAAGCGTGAAAAGCCCGCT-AATATTTTTGGCGTTCAATTATATATTTTTTATG
* * *
152933 -AGTACTGTGGCC
321 CA-TATTTTGGGC
* ** ** * * *
152945 AAAAATTAATGAAAAACT-TATT-GTTTC-CGTTTTATCAAAATTTTAGTTGAAATCGTGT--GT
1 AAAAATTAAGGAAAAA-TAT-TTCGGGTCAAATTTT-GCAAAATTTTAGCTGAAATCATGTACG-
* *
153005 TAACCATCACGGTTTCTGACTGAAAACGCGTTCAGGGGCC-CCGGCACAGTTTTGCATGATTTTT
62 TAACCATCACAGTTTCTG-CTGAAAACGCGTTCA-GGGCCTCCGGCTCAGTTTTGCATGATTTTT
* * * * * *
153069 GGCGCAGAGACTCTTTGAAATATCTATATTCATCTAATCAAATCACATCCACATTGGAATTAAGG
125 GGCGCAGAGAGTCATTGAAATATCTATATTCATCTAATCAAATCTCAGCCACACTGGATTTAAGG
* * *
153134 ATATGTTTTTATGAGCATCTGAATCTTGTTTCGGTTTAATCAGAAATTAATTTGGAAAAAATAGG
190 AAATGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATCAGAAATTAATTTGGAAAAAATAGG
*
153199 AAAAACAATATTAGAAGCGTGAAAAGCCCGCTAATCTTTTTGGCGTTCAATTATATATTTTTTAT
255 AAAAACAATATTAGAAGCGTGAAAAGCCCGCTAATATTTTTGGCGTTCAATTATATATTTTTTAT
153264 GCATATTTTGGGC
320 GCATATTTTGGGC
* *
153277 AAAAATTAAGGAAAAATATTTAGGGTCAAATTTTGCAAAATTTTAGCCGAAATCATGTACGTTAA
1 AAAAATTAAGGAAAAATATTTCGGGTCAAATTTTGCAAAATTTTAGCTGAAATCATGTACG-TAA
* *
153342 CCATCACAGTTTCTGTTTGAAAACGCGTTCAGGGCCTCCGGCTCAGGTTTGCATGATTTTTGGCG
65 CCATCACAGTTTCTG-CTGAAAACGCGTTCAGGGCCTCCGGCTCAGTTTTGCATGATTTTTGGCG
* * * *
153407 AAGAGAGTCATTGAAATATCTATATTTATCTAATCAAATCTCATCCACACTGGATTGAAGGAAAT
129 CAGAGAGTCATTGAAATATCTATATTCATCTAATCAAATCTCAGCCACACTGGATTTAAGGAAAT
* *
153472 GTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATC-GAAAATTAGTTTGGAAAAAATAGGAAA
194 GTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATCAG-AAATTAATTTGGAAAAAATAGGAAA
* * * * *
153536 AACAATATTAGATGCGTGAAAAGCCCGCCAATCTTTTTGGCGTTTAATTATATATTTTTTATGCG
258 AACAATATTAGAAGCGTGAAAAGCCCGCTAATATTTTTGGCGTTCAATTATATATTTTTTATGCA
153601 TATTTTGGGC
323 TATTTTGGGC
* * * * *
153611 AAAAATTGAGGAAAATTATTTCTGATCAAATTTTGTAAAATTTTAG-TCGAAATCATGTACGT--
1 AAAAATTAAGGAAAAATATTTCGGGTCAAATTTTGCAAAATTTTAGCT-GAAATCATGTACGTAA
* * *
153673 ---T-ACAGTTTCTGGTTGAAAACGCGTTCCGGGGCTCCGGCTCAGTTTTGCATGATTTTTGGCG
65 CCATCACAGTTTCT-GCTGAAAACGCGTTCAGGGCCTCCGGCTCAGTTTTGCATGATTTTTGGCG
* * * *
153734 CGGAGAGTCAATGAAATATCTATATTCATCTAATCAAATCTCAGCCAGA-TAGGATTTAAGGATA
129 CAGAGAGTCATTGAAATATCTATATTCATCTAATCAAATCTCAGCCACACT-GGATTTAAGGAAA
* *
153798 TGTTTTTACGAGCATCTGAATCTTGTTTCGATTT-ATACAGAAATTAATTTGGTAAAAATGGGAA
193 TGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAAT-CAGAAATTAATTTGGAAAAAATAGGAA
** * *
153862 AAATGATATT-GAAAGCGTGAAAAGCCCGAC-AATATTTTTGTCGTTCAATTATATATTATTTAT
257 AAACAATATTAG-AAGCGTGAAAAGCCCG-CTAATATTTTTGGCGTTCAATTATATATTTTTTAT
*
153925 GCATAGTTTGGGC
320 GCATATTTTGGGC
* * * *
153938 AAAAATTGATGAAAAATATTTTGGGTCAATTTTTGCAAAATTTTAGCTGAAATCATGTAC-TAAC
1 AAAAATTAAGGAAAAATATTTCGGGTCAAATTTTGCAAAATTTTAGCTGAAATCATGTACGTAAC
*
154002 CGTCAC
66 CATCAC
154008 GCTTTCAGGA
Statistics
Matches: 921, Mismatches: 107, Indels: 68
0.84 0.10 0.06
Matches are distributed among these distances:
326 5 0.01
327 278 0.30
328 5 0.01
329 4 0.00
330 24 0.03
331 50 0.05
332 136 0.15
333 122 0.13
334 297 0.32
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (332 bp):
AAAAATTAAGGAAAAATATTTCGGGTCAAATTTTGCAAAATTTTAGCTGAAATCATGTACGTAAC
CATCACAGTTTCTGCTGAAAACGCGTTCAGGGCCTCCGGCTCAGTTTTGCATGATTTTTGGCGCA
GAGAGTCATTGAAATATCTATATTCATCTAATCAAATCTCAGCCACACTGGATTTAAGGAAATGT
TTTTACGAGCATCTGAATCTTGTTTCGATTTAATCAGAAATTAATTTGGAAAAAATAGGAAAAAC
AATATTAGAAGCGTGAAAAGCCCGCTAATATTTTTGGCGTTCAATTATATATTTTTTATGCATAT
TTTGGGC
Found at i:153976 original size:661 final size:662
Alignment explanation
Indices: 152615--154007 Score: 1848
Period size: 661 Copynumber: 2.1 Consensus size: 662
152605 ATCTGAATCT
* * *
152615 AAAAATTTAGGAAAAATATTTCGGGTCAATTTTTGCAAAA-TTTATCTGAAAT-ATTGTACTAAC
1 AAAAATTAAGGAAAAATATTTAGGGTCAATTTTTGCAAAATTTTAGCTGAAATCA-TGTACTAAC
* * * * *
152678 CATCACGGTTTTTAGCTGAAAACGCGTTCCGGGCTCCGGCTCAGTTTTGCATGATTTTGGCGCAG
65 CATCACAGTTTCTAGCTGAAAACGCGTTCAGGGCTCCGGCTCAGGTTTGCATGATTTTGGCGAAG
*
152743 AGAATCATTGAAATATCTATATTCATCTAATCAAATCTCAGCCACACTAGATTTAAGGAAATGTT
130 AGAATCATTGAAATATCTATATTCATCTAATCAAATCTCAGCCACACTAGATTGAAGGAAATGTT
* * * *
152808 TTTTCGAGCATCTGAATCTTGTCTTGATTTAATTAGAACTTAATTTGGAAAAAAAAAGGAAAAAC
195 TTTACGAGCATCTGAATCTTGTCTTAATTTAATGAGAAATTAATTTGGAAAAAAAAAGGAAAAAC
* * * **
152873 CATATTTGAAGCATGAAAATCCCTTAAATAGTTTTGGCGTTGAATTATATATTTTTTATGAGTAC
260 AATATTAGAAGCATGAAAAGCCCGCAAATAGTTTTGGCGTTGAATTATATATTTTTTATGAGTAC
** * *
152938 TGTGGCCAAAAATTAATGAAAAACTTATTGTTTCCGTTTTATCAAAATTTTAGTTGAAATCGTGT
325 TGTGGCCAAAAATTAATGAAAAACTTATTGTTTCAATTTTATCAAAATTTTAGTCGAAATCG-AT
*
153003 GTTAACCATCACGGTTTCTGACTGAAAACGCGTTCAGGGGCCCCGGCACAGTTTTGCATGATTTT
389 GTTAACCATCACAGTTTCTGACTGAAAACGCGTTCAGGGGCCCCGGCACAGTTTTGCATGATTTT
** * *
153068 TGGCGCAGAGACTCTTTGAAATATCTATATTCATCTAATCAAATCACATCCACATTGGAATTAAG
454 TGGCGCAGAGACTCAATGAAATATCTATATTCATCTAATCAAATCACAGCCACATAGGAATTAAG
* *
153133 GATATGTTTTTATGAGCATCTGAATCTTGTTTCGGTTTAATCAGAAATTAATTTGGAAAAAATAG
519 GATATGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATCAGAAATTAATTTGGAAAAAATAG
* *
153198 GAAAAACAATATTAGAAGCGTGAAAAGCCCGCTAATCTTTTTGGCGTTCAATTATATATTTTTTA
584 GAAAAACAATATTAGAAGCGTGAAAAGCCCGCTAATATTTTTGGCGTTCAATTATATATTATTTA
*
153263 TGCATATTTTGGGC
649 TGCATAGTTTGGGC
* *
153277 AAAAATTAAGGAAAAATATTTAGGGTCAAATTTTGCAAAATTTTAGCCGAAATCATGTACGTTAA
1 AAAAATTAAGGAAAAATATTTAGGGTCAATTTTTGCAAAATTTTAGCTGAAATCATGTAC--TAA
*
153342 CCATCACAGTTTCT-GTTTGAAAACGCGTTCAGGGCCTCCGGCTCAGGTTTGCATGATTTTTGGC
64 CCATCACAGTTTCTAG-CTGAAAACGCGTTCAGGG-CTCCGGCTCAGGTTTGCATGA-TTTTGGC
* * * *
153406 GAAGAGAGTCATTGAAATATCTATATTTATCTAATCAAATCTCATCCACACTGGATTGAAGGAAA
126 GAAGAGAATCATTGAAATATCTATATTCATCTAATCAAATCTCAGCCACACTAGATTGAAGGAAA
* *
153471 TGTTTTTACGAGCATCTGAATCTTGT-TTCAATTTAATCGA-AAATTAGTTTGG-AAAAAATAGG
191 TGTTTTTACGAGCATCTGAATCTTGTCTT-AATTTAAT-GAGAAATTAATTTGGAAAAAAAAAGG
* * * ** *
153533 AAAAACAATATTAGATGCGTGAAAAGCCCGCCAATCTTTTTGGCGTTTAATTATATATTTTTTAT
254 AAAAACAATATTAGAAGCATGAAAAGCCCGCAAATAGTTTTGGCGTTGAATTATATATTTTTTAT
* * * * * * *
153598 GCGTATTTTGGGCAAAAATTGA-GGAAAA-TTATT-TCTGATCAAATTTTGT-AAAATTTTAGTC
319 GAGTACTGTGGCCAAAAATTAATGAAAAACTTATTGT-T--TC-AATTTTATCAAAATTTTAGTC
* * ** * * *
153659 GAAATC-ATG-T-A-CGTTACAGTTTCTGGTTGAAAACGCGTTCCGGGGCTCCGGCTCAGTTTTG
380 GAAATCGATGTTAACCATCACAGTTTCTGACTGAAAACGCGTTCAGGGGCCCCGGCACAGTTTTG
* * * *
153720 CATGATTTTTGGCGCGGAGAGTCAATGAAATATCTATATTCATCTAATCAAATCTCAGCCAGATA
445 CATGATTTTTGGCGCAGAGACTCAATGAAATATCTATATTCATCTAATCAAATCACAGCCACATA
*
153785 GGATTTAAGGATATGTTTTTACGAGCATCTGAATCTTGTTTCGATTT-ATACAGAAATTAATTTG
510 GGAATTAAGGATATGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAAT-CAGAAATTAATTTG
* * ** *
153849 GTAAAAATGGGAAAAATGATATT-GAAAGCGTGAAAAGCCCGAC-AATATTTTTGTCGTTCAATT
574 GAAAAAATAGGAAAAACAATATTAG-AAGCGTGAAAAGCCCG-CTAATATTTTTGGCGTTCAATT
153912 ATATATTATTTATGCATAGTTTGGGC
637 ATATATTATTTATGCATAGTTTGGGC
* * *
153938 AAAAATTGATGAAAAATATTTTGGGTCAATTTTTGCAAAATTTTAGCTGAAATCATGTACTAACC
1 AAAAATTAAGGAAAAATATTTAGGGTCAATTTTTGCAAAATTTTAGCTGAAATCATGTACTAACC
*
154003 GTCAC
66 ATCAC
154008 GCTTTCAGGA
Statistics
Matches: 638, Mismatches: 77, Indels: 35
0.85 0.10 0.05
Matches are distributed among these distances:
659 9 0.01
660 3 0.00
661 289 0.45
662 39 0.06
663 17 0.03
664 10 0.02
665 36 0.06
666 121 0.19
667 113 0.18
668 1 0.00
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (662 bp):
AAAAATTAAGGAAAAATATTTAGGGTCAATTTTTGCAAAATTTTAGCTGAAATCATGTACTAACC
ATCACAGTTTCTAGCTGAAAACGCGTTCAGGGCTCCGGCTCAGGTTTGCATGATTTTGGCGAAGA
GAATCATTGAAATATCTATATTCATCTAATCAAATCTCAGCCACACTAGATTGAAGGAAATGTTT
TTACGAGCATCTGAATCTTGTCTTAATTTAATGAGAAATTAATTTGGAAAAAAAAAGGAAAAACA
ATATTAGAAGCATGAAAAGCCCGCAAATAGTTTTGGCGTTGAATTATATATTTTTTATGAGTACT
GTGGCCAAAAATTAATGAAAAACTTATTGTTTCAATTTTATCAAAATTTTAGTCGAAATCGATGT
TAACCATCACAGTTTCTGACTGAAAACGCGTTCAGGGGCCCCGGCACAGTTTTGCATGATTTTTG
GCGCAGAGACTCAATGAAATATCTATATTCATCTAATCAAATCACAGCCACATAGGAATTAAGGA
TATGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATCAGAAATTAATTTGGAAAAAATAGGA
AAAACAATATTAGAAGCGTGAAAAGCCCGCTAATATTTTTGGCGTTCAATTATATATTATTTATG
CATAGTTTGGGC
Found at i:155418 original size:332 final size:332
Alignment explanation
Indices: 154410--159568 Score: 6412
Period size: 332 Copynumber: 15.5 Consensus size: 332
154400 TTTAAGGATA
* * *
154410 TGTTTCGATTTATAT-AGAAATTAATTTGGTAAAAATAGTAAAAACGATATTAGATGCGTGAAAA
1 TGTTTCGATTTA-ATCAGAAATTAATTTGGAAAAAATAGGAAAAACGATATTAGAAGCGTGAAAA
* * * *
154474 GCCTGCCAATATTTTAT-GCGTTCAATTATATATTATTTATGCATATTTTGGGCAAAAATTGATG
65 GCCCGCCAATATTTT-TGGCGTTCAATTATATATTTTTTATGCGTATTTTGGGCAAAAATTGAGG
* * * *
154538 AAAAATATTTTGGGTCAATTTTTGAAAAATTTTAGCCGAAATCATG---T-A-CATCACGGTTTC
129 AAAAATATTTCGGGTCAAATTTTGCAAAATTTTAGTCGAAATCATGTACTAACCATCACGGTTTC
* **** * *
154598 TGGCTAAAAATTTTTTTGCGGGGCTCCGGCTAAGTTTTGCATGATTTTTGGCGCAGAGAGTCATT
194 TGGCTGAAAA-CGCGTTCCGGGGCTCCGGCTCAGTTTTGCATGATTTTTGGCGCAGAGAGTCATT
* * *
154663 GAAATATCTATATTCATCTAATCAAATCTCAGCCACATTGGATTTAAGGAAATGTTTTTACGAGT
258 GAAATATCTATATTCATCTAATCAAATCTCAGCCACATAGGATTTAAGGATATGTTTTTACGAGC
154728 ATCTGAATCT
323 ATCTGAATCT
* * * *
154738 TGTTTCGATTTAATTAGAACTTAATTTGGAAAATAAAATAGGAAAAACCATATTTA-AAGCATGA
1 TGTTTCGATTTAATCAGAAATTAATTTGG--AA-AAAATAGGAAAAACGATA-TTAGAAGCGTGA
* *** * * ** * *
154802 AAATCCCTTAAATAGTTTTGGCGTTGAATTATATATTTTTTATAAGTATTGT-GGCAAAAAATTA
62 AAAGCCCGCCAATATTTTTGGCGTTCAATTATATATTTTTTATGCGTATTTTGGGC-AAAAATTG
* ** ** * * *
154866 ACGAAAAACTTATCGTTTCCGTTTTATCAAAATTTTAGTTGAAATCGTTTA-TCAAAATTAACG-
126 AGGAAAAA--TA---TTT-CG---GGTC-AAATTTT-G-CAAAAT--TTTAGTCGAAA-TCATGT
** ** * * * *
154929 AAAAACCCATCACGGTTTCTAACTGAAAATGCGTTCAGGAGC-CCGGCTCAGTTATGCAT-ATTT
176 ACTAA-CCATCACGGTTTCTGGCTGAAAACGCGTTCCGGGGCTCCGGCTCAGTTTTGCATGATTT
* ** * * * * *
154992 TCGGCGTTGAGACTCCTTGAAATATCTATATTCATCTAATCAAATCTCAGCCACATTGCAATTAA
240 TTGGCGCAGAGAGTCATTGAAATATCTATATTCATCTAATCAAATCTCAGCCACATAGGATTTAA
* * *
155057 GGATATGTTTATATGAGCATCTAAATCT
305 GGATATGTTTTTACGAGCATCTGAATCT
* * *
155085 TGTTTCGATTTAATCAGAAATTAATTTGGAAAAAATAGGAAAAACAATATTAGAACCGTGAAAAA
1 TGTTTCGATTTAATCAGAAATTAATTTGGAAAAAATAGGAAAAACGATATTAGAAGCGTGAAAAG
* * *
155150 CCCGCCAATCTTTTTGGCGTTCAATTATACATTTTTTATGCGTATTTTAGGCAAAAATTGAGGAA
66 CCCGCCAATATTTTTGGCGTTCAATTATATATTTTTTATGCGTATTTTGGGCAAAAATTGAGGAA
**
155215 AAATATTTCGGGTCAAATTTTGCAAAATTTTAGTCGAAATCATGTACTAACCATCACAATTTCTG
131 AAATATTTCGGGTCAAATTTTGCAAAATTTTAGTCGAAATCATGTACTAACCATCACGGTTTCTG
* * * **
155280 GTTGAAAACGCGTTCCGGGGCTCCGGCTGAGTTTTGCATGATTTTTTGCGCAGAGAGTCAAAGAA
196 GCTGAAAACGCGTTCCGGGGCTCCGGCTCAGTTTTGCATGATTTTTGGCGCAGAGAGTCATTGAA
* * * *
155345 ATATCTATATTCATCTAATTAAATCTCAGCCAGATAGGAATTAAGGATATGTTATTACGAGCATC
261 ATATCTATATTCATCTAATCAAATCTCAGCCACATAGGATTTAAGGATATGTTTTTACGAGCATC
155410 TGAATCT
326 TGAATCT
* * *
155417 TGTTTCGATTT-GTACAAAAATTAATTTGGTAAAAATAGGAAAAACGATATTA-AGAGCGTGAAA
1 TGTTTCGATTTAAT-CAGAAATTAATTTGGAAAAAATAGGAAAAACGATATTAGA-AGCGTGAAA
* * * * ** * *
155480 AGCCCGTCAATATTTTTGGCGTTCAATTATATATTATTTATGCATAGTTTGGAAAAAAACTGATG
64 AGCCCGCCAATATTTTTGGCGTTCAATTATATATTTTTTATGCGTATTTTGGGCAAAAATTGAGG
* * * *
155545 AAAGATATTTTGGGTCAATTTTTGCAAAATTTTAG-CTGATATCATGTACTAACCATCACGGTTT
129 AAAAATATTTCGGGTCAAATTTTGCAAAATTTTAGTC-GAAATCATGTACTAACCATCACGGTTT
* * * ** * *
155609 CTGGTTGAAAACGCGTTCCGCGGCTCTGATTAAGTTTTGCTTGATTTTTGGCGCAGAGAGTCATT
193 CTGGCTGAAAACGCGTTCCGGGGCTCCGGCTCAGTTTTGCATGATTTTTGGCGCAGAGAGTCATT
*
155674 GAAATATCTATATTCATCTAATCAAATCTCAGCCAGATAGGATTTAAGGATATGTTTTTACGAGC
258 GAAATATCTATATTCATCTAATCAAATCTCAGCCACATAGGATTTAAGGATATGTTTTTACGAGC
155739 ATCTGAATCT
323 ATCTGAATCT
* * * *
155749 TGTTTCGATTT-GTACAAAAATTAATTTGGTAAAAATAGGGAAAACGATATTAGAAGCGTGAAAA
1 TGTTTCGATTTAAT-CAGAAATTAATTTGGAAAAAATAGGAAAAACGATATTAGAAGCGTGAAAA
* * * * *
155813 GCCCGCCAATATTTTTGGCGTTCAATTATATATTATTTATGCATAGTTTGGGTAAAAATTGATGA
65 GCCCGCCAATATTTTTGGCGTTCAATTATATATTTTTTATGCGTATTTTGGGCAAAAATTGAGGA
* * *
155878 AAAATATTTTGGGTCAATTTTTGCAAAATTTTAG-CTGATATCATGTACTAACCATCACGGTTTC
130 AAAATATTTCGGGTCAAATTTTGCAAAATTTTAGTC-GAAATCATGTACTAACCATCACGGTTTC
* * ** *
155942 TGGCTGAAAACGCGTTCCGCGGCTCTGATTCAGTTTTGCTTGATTTTTGGCGCAGAGAGTCATTG
194 TGGCTGAAAACGCGTTCCGGGGCTCCGGCTCAGTTTTGCATGATTTTTGGCGCAGAGAGTCATTG
*
156007 AAATATCTATATTCATCTAATCAAATCTCAGCCACACT-GGATTTAAGGAAATGTTTTTACGAGC
259 AAATATCTATATTCATCTAATCAAATCTCAGCCACA-TAGGATTTAAGGATATGTTTTTACGAGC
156071 ATCTGAATCT
323 ATCTGAATCT
* * **
156081 TGTTTCGATTTAATC-GAAAATTAATTTGGAAAAAATAGGAAAAACTATATTAGAAACGTGTGAA
1 TGTTTCGATTTAATCAG-AAATTAATTTGGAAAAAATAGGAAAAACGATATTAGAAGCGTGAAAA
*
156145 GCCCGCCAATCTTTTTGGCGTTCAATTATATATTTTTTATGCGTATTTTGGGCAAAAATTGAGGA
65 GCCCGCCAATATTTTTGGCGTTCAATTATATATTTTTTATGCGTATTTTGGGCAAAAATTGAGGA
* ** *
156210 AAAATATTTCGAGTCAAATTTTGCAAAATTTTAGTCGAAATCATGTACTAACCATCACAATTTAT
130 AAAATATTTCGGGTCAAATTTTGCAAAATTTTAGTCGAAATCATGTACTAACCATCACGGTTTCT
* * * * ** *
156275 GGTTGAAAACGCGTTCCAGGGCTCTGGCTGAGTTTTGCATGATTTTTTCCGTAGAGAGTCATTGA
195 GGCTGAAAACGCGTTCCGGGGCTCCGGCTCAGTTTTGCATGATTTTTGGCGCAGAGAGTCATTGA
*
156340 AATATCTATATTCATCTAATCAAATCTCAGCCATATAGGATTTAAGGATATGTTTTTACGAGCAT
260 AATATCTATATTCATCTAATCAAATCTCAGCCACATAGGATTTAAGGATATGTTTTTACGAGCAT
156405 CTGAATCT
325 CTGAATCT
* * *
156413 TGTTTCGATATAGATCAGAAAATTAATTTGG-TAAAATAGG-AAAACTATATTAGAAGCGTGAAA
1 TGTTTCGATTTA-ATCAG-AAATTAATTTGGAAAAAATAGGAAAAACGATATTAGAAGCGTGAAA
* * * *
156476 AGCCCGCCAATATTTTTTGCGTTCAATTATATATTATTTATGCATATTTTGGGCAAAAATTGATG
64 AGCCCGCCAATATTTTTGGCGTTCAATTATATATTTTTTATGCGTATTTTGGGCAAAAATTGAGG
* * * *
156541 AAAAATATTTTGGGTCAATTTTTGCAAAATTTTAGCCGAAATCATGTGCTAACCATCACGGTTTC
129 AAAAATATTTCGGGTCAAATTTTGCAAAATTTTAGTCGAAATCATGTACTAACCATCACGGTTTC
*
156606 TGGCTGAAAACGCGTTCCGGGGCTTCGGCTCAGTTTTGCATGATTTTTGGCGCAGAGAGTCATTG
194 TGGCTGAAAACGCGTTCCGGGGCTCCGGCTCAGTTTTGCATGATTTTTGGCGCAGAGAGTCATTG
*
156671 AAATATCTATATTCATCTAATCAAATCTCAGCCAAATAGGATTTAAGGATATGTTTTTACGAGCA
259 AAATATCTATATTCATCTAATCAAATCTCAGCCACATAGGATTTAAGGATATGTTTTTACGAGCA
156736 TCTGAATCT
324 TCTGAATCT
*
156745 TGTTTCGATTTATAT-AGAAATTAATTTGGTAAAAATAGG-AAAACGATATTAGAAGCGTGAAAA
1 TGTTTCGATTTA-ATCAGAAATTAATTTGGAAAAAATAGGAAAAACGATATTAGAAGCGTGAAAA
** * * * * *
156808 GCCCGCCAATATTTTACGCGTTCAATTATATATTATTTATGCATAGTTTGGGAAAAAATTGATGA
65 GCCCGCCAATATTTTTGGCGTTCAATTATATATTTTTTATGCGTATTTTGGGCAAAAATTGAGGA
* * *
156873 AAAATATTTTGGGTCAATTTTTGCAAAATTTTAG-CTGATATCATGTACTAACCATCACGGTTTC
130 AAAATATTTCGGGTCAAATTTTGCAAAATTTTAGTC-GAAATCATGTACTAACCATCACGGTTTC
* * ** *
156937 TGGCTGAAAACGCGTTCCGCGGCTCTGATTCAGTTTTGCTTGATTTTTGGCGCAGAGAGTCATTG
194 TGGCTGAAAACGCGTTCCGGGGCTCCGGCTCAGTTTTGCATGATTTTTGGCGCAGAGAGTCATTG
* * *
157002 AAATATCTATATTCATCTAATCAAATCTCAACCACACTA-GATTTAGGGAAATGTTTTTACGAGC
259 AAATATCTATATTCATCTAATCAAATCTCAGCCACA-TAGGATTTAAGGATATGTTTTTACGAGC
157066 ATCTGAATCT
323 ATCTGAATCT
* * * **
157076 TGTTTCGATTTAATC-GAAAATTAATTTGAAAAAAATAGGAAAAACTATATTAGAAACGTGTGAA
1 TGTTTCGATTTAATCAG-AAATTAATTTGGAAAAAATAGGAAAAACGATATTAGAAGCGTGAAAA
* * *
157140 GCCCGCCAATCTTTTGGGCGTTCAATTATATATTATTTATGCGTATTTTGGGCAAAAATTGAGGA
65 GCCCGCCAATATTTTTGGCGTTCAATTATATATTTTTTATGCGTATTTTGGGCAAAAATTGAGGA
* **
157205 AAAATATTTCGGGTCAAATTTTACAAAATTTTAGTCGAAATCATGTACTAACCATCACAATTTCT
130 AAAATATTTCGGGTCAAATTTTGCAAAATTTTAGTCGAAATCATGTACTAACCATCACGGTTTCT
* * *
157270 GGTTGAAAACGCGTTTCGGGGCTCCGGCTCAGTTTTGCATGATTTTTGGCACAGAGAGTCATTGA
195 GGCTGAAAACGCGTTCCGGGGCTCCGGCTCAGTTTTGCATGATTTTTGGCGCAGAGAGTCATTGA
* *
157335 AATATCTATACTCATCTAATCAAATCTCAGCCACACTA-GATTTAAGGAAATGTTTTTACGAGCA
260 AATATCTATATTCATCTAATCAAATCTCAGCCACA-TAGGATTTAAGGATATGTTTTTACGAGCA
157399 TCTGAATCT
324 TCTGAATCT
* * * * * * * * *
157408 TGTTTTGAGTTAATTACAACTTAATTTGGAAAAAAAAATAGGAAAACCCATATTTGAAGCATGAA
1 TGTTTCGATTTAATCAGAAATTAATTTGG---AAAAAATAGGAAAAACGATATTAGAAGCGTGAA
* *** * * * * * * *
157473 AATCCCTTAAATAGTTTTGGCATTCAATTATATATTTTTTATGAGTATTGTGGCCAAAAATTAAC
63 AAGCCCGCCAATATTTTTGGCGTTCAATTATATATTTTTTATGCGTATTTTGGGCAAAAATTGAG
* ** * * * * ** *
157538 GAAATACT-TTTCGCTTTC--GTTTTATCAAAATTTTAGTTGAAATCGTGTGTTAACCATCACAG
128 GAAA-AATATTTCG-GGTCAAATTTT-GCAAAATTTTAGTCGAAATCATGTACTAACCATCACGG
* * * ** * * *
157600 TTTCTGACTAAAAATGCGTTGAGGGGAC-CCGGCTCAGTTATGCATGATTTTTGGCGCCGAGACT
190 TTTCTGGCTGAAAACGCGTTCCGGGG-CTCCGGCTCAGTTTTGCATGATTTTTGGCGCAGAGAGT
* * * * *
157664 CCTTGAAATATCTATATTCATCTAATCAAATCTCAGCCACATTGGAGTTAATGATATGTTTATAC
254 CATTGAAATATCTATATTCATCTAATCAAATCTCAGCCACATAGGATTTAAGGATATGTTTTTAC
*
157729 GAGCATCTAAATCT
319 GAGCATCTGAATCT
* * *
157743 TGTTTCGATTTAATCAGAAATTAGTTTGGAAAAAATAGGAAAAACAATATTAGAACCGTGAAAAG
1 TGTTTCGATTTAATCAGAAATTAATTTGGAAAAAATAGGAAAAACGATATTAGAAGCGTGAAAAG
* *
157808 CCTGCCAATCTTTTTGGCGTTCAATTATATATTTTTTATGCGTATTTTGGGCAAAAATTGAGGAA
66 CCCGCCAATATTTTTGGCGTTCAATTATATATTTTTTATGCGTATTTTGGGCAAAAATTGAGGAA
*** * * *
157873 AAATATTTCGGGTCTTTTTTTGCAAAATTTTAGCCGAAATCATGTACTAACCATCATGGATTCTG
131 AAATATTTCGGGTCAAATTTTGCAAAATTTTAGTCGAAATCATGTACTAACCATCACGGTTTCTG
* * * *
157938 GTTGAAAACGCGTTCCGGGGCTCCGGCCCAGTTTTGCATGATTTTTGGCGCAGAGAGTCAATCAA
196 GCTGAAAACGCGTTCCGGGGCTCCGGCTCAGTTTTGCATGATTTTTGGCGCAGAGAGTCATTGAA
* * *
158003 ATATCTATATTTATCTAATCAAATCTCAGCCACACT-GGATTTAAGGAAATGTTTTTACGCGCAT
261 ATATCTATATTCATCTAATCAAATCTCAGCCACA-TAGGATTTAAGGATATGTTTTTACGAGCAT
158067 CTGAATCT
325 CTGAATCT
* * * * * * *
158075 TGTTTCGATTTAATCGGAAATTAATATGGAAAAAATATGAAAAACTATATTAGAAACTTGTAAAG
1 TGTTTCGATTTAATCAGAAATTAATTTGGAAAAAATAGGAAAAACGATATTAGAAGCGTGAAAAG
*
158140 CCCGCCAATCTTTTTGGCGTTCAATTATATATTTTTTATGCGTATTTTGGGCAAAAATTGAGGAA
66 CCCGCCAATATTTTTGGCGTTCAATTATATATTTTTTATGCGTATTTTGGGCAAAAATTGAGGAA
* *
158205 AAATATTTCGGGTCAAATTTTGCAAAA-TTTAGTCGAAATCATGTACTAACCATCACAGTTTCTA
131 AAATATTTCGGGTCAAATTTTGCAAAATTTTAGTCGAAATCATGTACTAACCATCACGGTTTCTG
* * *
158269 GTTGAAAACGCGTTCCGGGGCTCCGGCTCAGTTTTGCATGACTTTTGGCGCAGAGAGTCAATGAA
196 GCTGAAAACGCGTTCCGGGGCTCCGGCTCAGTTTTGCATGATTTTTGGCGCAGAGAGTCATTGAA
*
158334 ATATCTATATTCATCTAATCAAATCTCAGCCAGATAGGATTTAAGGATATGTTTTTACGAGCATC
261 ATATCTATATTCATCTAATCAAATCTCAGCCACATAGGATTTAAGGATATGTTTTTACGAGCATC
158399 TGAATCT
326 TGAATCT
* * *
158406 TGTTTCGATTT-ATACAAAAATTAATTTGGTAAAAATAGGAAAAACGATA-TAAAGAGCGTGAAA
1 TGTTTCGATTTAAT-CAGAAATTAATTTGGAAAAAATAGGAAAAACGATATTAGA-AGCGTGAAA
* * * * * * *
158469 AGCCTGCCATTATTTTTGGCGTTCAATTATATATTATTTATGCATAGTTTGGGCAAAAATTAATG
64 AGCCCGCCAATATTTTTGGCGTTCAATTATATATTTTTTATGCGTATTTTGGGCAAAAATTGAGG
* * *
158534 AAAAATATTTTGGGTCAATTTTTGCAAAATTTTAG-CTGAAATCATGTACTACTAATCATCACGG
129 AAAAATATTTCGGGTCAAATTTTGCAAAATTTTAGTC-GAAATCATG---TACTAACCATCACGG
*
158598 TTTATGGCTGAAAACGCGTTCCGGGGCTCCGGCTCAGTTTTGCATGATTTTTGGCGCAGAGAGTC
190 TTTCTGGCTGAAAACGCGTTCCGGGGCTCCGGCTCAGTTTTGCATGATTTTTGGCGCAGAGAGTC
* * *
158663 ACTGAAATATCTATATTCATCTAATCAAATCTCAGCAACACTA-GATTTAAGGAAATGTTTTTAC
255 ATTGAAATATCTATATTCATCTAATCAAATCTCAGCCACA-TAGGATTTAAGGATATGTTTTTAC
*
158727 GAACATCTGAATCT
319 GAGCATCTGAATCT
* * * * * *
158741 TGTTTTGATTTAATTAGAACTTAATTTGGAAAAAAAATAGGAAAAACCATATTTGAAGCATGAAA
1 TGTTTCGATTTAATCAGAAATTAATTTGG--AAAAAATAGGAAAAACGATATTAGAAGCGTGAAA
* *** * * * * * * * *
158806 ATCCCTTAAATAGTTTTAGCGTTGAATTATATATTTTTTATGAGTATTGTGGCCAAAAATTAACG
64 AGCCCGCCAATATTTTTGGCGTTCAATTATATATTTTTTATGCGTATTTTGGGCAAAAATTGAGG
** * * * * **
158871 AAAAACT-TTTCGTTTTC--GTTTTATCAAAATTTTAGTTGAAATCGTGTGTTAACCATCACGGT
129 AAAAA-TATTTCG-GGTCAAATTTT-GCAAAATTTTAGTCGAAATCATGTACTAACCATCACGGT
* * * * * * * *
158933 TTCTGACTGAAAATGCGTTCAGGGGCCCCAGCTCAGTTATGCATGATTTTTGGCGCAGAGACTCT
191 TTCTGGCTGAAAACGCGTTCCGGGGCTCCGGCTCAGTTTTGCATGATTTTTGGCGCAGAGAGTCA
* * * *
158998 TTGAAATATCTATATTCATCTAATCAAATCTCAGCCACATTGCAATTAAGGATATGTTTATACGA
256 TTGAAATATCTATATTCATCTAATCAAATCTCAGCCACATAGGATTTAAGGATATGTTTTTACGA
*
159063 GCATCTAAATCT
321 GCATCTGAATCT
* *
159075 TGTTTCGATTTAATCAGAAATTAATTTGGAAAAAATAGGAAAAACAATATTAGAACCGTGAAAAG
1 TGTTTCGATTTAATCAGAAATTAATTTGGAAAAAATAGGAAAAACGATATTAGAAGCGTGAAAAG
* * * *
159140 CCCGCCAATCTTTTTGGCGTTCAATTATATACTTTTTATGCGTATTTTGGGGAAAAATTGAGGGA
66 CCCGCCAATATTTTTGGCGTTCAATTATATATTTTTTATGCGTATTTTGGGCAAAAATTGAGGAA
**
159205 AAATATTTCGGGTC-AATTTTAGCAAAATTTTAACCGAAATCATGTACTAACCATCACGGTTTCT
131 AAATATTTCGGGTCAAATTTT-GCAAAATTTTAGTCGAAATCATGTACTAACCATCACGGTTTCT
* * * *
159269 GGTTGAAAACACGTTTCGGGGCTCCGGCTCAGTTTTGCATGATTTTTGGCGCTGAGAGTCATTGA
195 GGCTGAAAACGCGTTCCGGGGCTCCGGCTCAGTTTTGCATGATTTTTGGCGCAGAGAGTCATTGA
* *
159334 AATATCTATATTTATCTAATCAAATCTCAGCCACACT-GGATTTAAGGAAATGTTTTTACGAGCA
260 AATATCTATATTCATCTAATCAAATCTCAGCCACA-TAGGATTTAAGGATATGTTTTTACGAGCA
159398 TCTGAATCT
324 TCTGAATCT
* *
159407 TGTTTCGATTTAATC-GAAAATTAATTTGGAAAAAATAGGAAAAACTATATTAGAAACGTGAAAA
1 TGTTTCGATTTAATCAG-AAATTAATTTGGAAAAAATAGGAAAAACGATATTAGAAGCGTGAAAA
* * * *
159471 GCCCGCCAATATTTTTGGCGTTCCATTGTAT-GTTTTTATGCGTATTTCGGGCAAAAATTGAGGA
65 GCCCGCCAATATTTTTGGCGTTCAATTATATATTTTTTATGCGTATTTTGGGCAAAAATTGAGGA
159535 AAAATATTTCGGGTCAAATTTTGCAAAATTTTAG
130 AAAATATTTCGGGTCAAATTTTGCAAAATTTTAG
Statistics
Matches: 4200, Mismatches: 543, Indels: 173
0.85 0.11 0.04
Matches are distributed among these distances:
327 2 0.00
328 25 0.01
330 62 0.01
331 768 0.18
332 2304 0.55
333 26 0.01
334 187 0.04
335 430 0.10
336 16 0.00
337 104 0.02
338 7 0.00
339 3 0.00
340 2 0.00
341 6 0.00
342 3 0.00
343 7 0.00
344 82 0.02
345 12 0.00
347 112 0.03
348 16 0.00
349 7 0.00
350 19 0.00
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.35
Consensus pattern (332 bp):
TGTTTCGATTTAATCAGAAATTAATTTGGAAAAAATAGGAAAAACGATATTAGAAGCGTGAAAAG
CCCGCCAATATTTTTGGCGTTCAATTATATATTTTTTATGCGTATTTTGGGCAAAAATTGAGGAA
AAATATTTCGGGTCAAATTTTGCAAAATTTTAGTCGAAATCATGTACTAACCATCACGGTTTCTG
GCTGAAAACGCGTTCCGGGGCTCCGGCTCAGTTTTGCATGATTTTTGGCGCAGAGAGTCATTGAA
ATATCTATATTCATCTAATCAAATCTCAGCCACATAGGATTTAAGGATATGTTTTTACGAGCATC
TGAATCT
Done.