Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012367.1 Corchorus olitorius cultivar O-4 contig12400, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  131263

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
164--2940
332
8.4
331
85
4
3481
32
15
17
34
1.91
2726--3155
215
2.0
215
88
0
646
32
17
18
31
1.94
4261--4302
21
2.0
21
90
0
66
40
19
19
21
1.92
6080--6104
12
2.1
12
100
0
50
0
24
0
76
0.80
22348--22386
4
9.8
4
82
0
51
69
0
30
0
0.89
29339--29370
15
2.1
15
94
0
55
43
12
9
34
1.75
32133--32213
30
2.6
32
84
11
114
30
6
12
50
1.64
32145--32325
29
6.1
30
72
20
132
29
9
14
46
1.76
40699--40740
21
2.0
21
95
0
75
28
30
19
21
1.97
44226--44262
19
1.9
19
88
0
56
37
10
18
32
1.86
52672--52704
2
16.5
2
100
0
66
48
0
0
51
1.00
72243--72269
12
2.2
12
100
0
54
33
7
7
51
1.58
73345--73405
20
3.0
20
80
4
68
37
11
3
47
1.56
86550--86581
11
2.6
13
90
9
50
0
9
6
84
0.78
87154--87188
14
2.4
15
85
9
54
45
20
14
20
1.85
87160--87188
14
2.1
14
100
0
58
44
20
13
20
1.85
92856--92993
65
2.1
65
94
0
240
32
12
18
36
1.88
92965--93028
21
3.2
20
75
8
67
37
10
17
34
1.85
96103--96188
40
2.2
40
100
0
172
47
8
29
15
1.73
102716--102749
18
1.9
17
88
5
50
32
8
26
32
1.87
126448--127577
333
3.4
332
82
3
1403
34
14
13
36
1.87
127596--131263
333
11.1
333
89
2
5428
36
17
15
31
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
127596--131263
667
5.5
666
89
2
5446
36
17
15
31
1.91

Tables:   1

The End!