Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01012368.1 Corchorus olitorius cultivar O-4 contig12401, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36325
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Found at i:1198 original size:332 final size:333
Alignment explanation
Indices: 1--3129 Score: 4724
Period size: 332 Copynumber: 9.4 Consensus size: 333
* * * *
1 GAGCCGGGACATCGGAACGTGTCTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCTGCAAA
1 GAGCCGGGGCACCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCTGCAAA
* *
66 AAAGTTTGCAAAACTTGACCCGAAAGTTTTTTCCTCAATTTTTAACCGCAATACATGT-AAAAAT
66 AAA-TTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACATGTAAAAAAT
* * * *
130 ATATAATTTAATGCCAAAAAAGATTGAA-GGTTTTTCACGCTTCTAATATCAATTTTT-AATTCT
130 ATATAATTCAACGCC-AAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCATTTTTTCAATTCT
*
193 TTCCCGAATTAATTTCTGATTAAATCGAAACAAGATTCAGATGATCGTAAAAACAAATCCTTAAA
194 TTCCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGATCGTAAAAACAAATCCTTAAA
* *
258 TCCATTGTGGCTGAGATTTGGGATGAATAATATAGATGTTTCAATAAGTCTTGCCTCC-AAAATC
259 TCCATTGTGGCTGAGATTTGGGATGAATAATATAGATATTTCAATAAGTCTTGGCTCCAAAAATC
322 ATGCAAAACT
324 ATGCAAAACT
* * * * * * *
332 GAGCTGGGCCACCGGAACACATTTTTAGGCAAAAACCATGATGGTTAGTACACGATTT-TGGCGA
1 GAGCCGGGGCACCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCT-GCAA
* * * *
396 AAATTTTGCAAAAATTGACCCGAAAGATATTTCCTCAATTTTCAACCGCAATACACGTAAAAAAT
65 AAAATTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACATGTAAAAAAT
* * * * *
461 ATACAATTCAACGCCAAAAAGAATGAAGGGCTTTTCACGCTTCAAATACCATTTTTTCAATTATT
130 ATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCATTTTTTCAATTCTT
*
526 TCCCGAATTAATTTCTAATTAAATCGAAACAAGATTTAGATGATCGTAAAAACAAATCCTT-AAT
195 TCCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGATCGTAAAAACAAATCCTTAAAT
* *
590 CCATTGTGGCAT-AGATTTGGGATGATTAATATAGATATTTCAATAAGTCTTGGCGCCAAAAATC
260 CCATTGTGGC-TGAGATTTGGGATGAATAATATAGATATTTCAATAAGTCTTGGCTCCAAAAATC
654 ATGCAAAACT
324 ATGCAAAACT
*
664 GAGCCGGGG--TCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCTGCAAA
1 GAGCCGGGGCACCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCTGCAAA
727 AAATTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACATGTAAAAAATA
66 AAATTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACATGTAAAAAATA
* ** *
792 TATAATTCGACGCCAAAATTATTGAAGGTCTTTTCACGCTTCTAATATCATTTTTTCAATT-TTT
131 TATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCATTTTTTCAATTCTTT
** * *
856 CCAAAATTAATTTCTATTTAAATTGAAACAAGATTCAGATGATCGTAAAAACAAATCCTTAAATC
196 CCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGATCGTAAAAACAAATCCTTAAATC
* *
921 CATTGTGGCTGAGATTTGGGATGAATAATATAGATGTTTCAATAAGTATTGGCTCCAAAAATCAT
261 CATTGTGGCTGAGATTTGGGATGAATAATATAGATATTTCAATAAGTCTTGGCTCCAAAAATCAT
986 GCAAAACT
326 GCAAAACT
*
994 GAGCCGGGGCACCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACCATTTCTGCAAA
1 GAGCCGGGGCACCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCTGCAAA
* *
1059 AAATTTGCAAAAATTGACCCGAAAAATTTTTCCTCAAATTTTAACCGCAATACATGT-AAAAATA
66 AAATTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACATGTAAAAAATA
1123 TATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCATTTTTTCAATTCTTT
131 TATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCATTTTTTCAATTCTTT
* *
1188 CCCGAATTAATTTCTAATTAAATCGAAACAAGATTCTGATGATCGCAAAAACAAATCCTTAAATC
196 CCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGATCGTAAAAACAAATCCTTAAATC
* *
1253 CATTGTGGCTGAGATTTTGGATGAATAATATAGATATTTCAATGAGTCTTGGCTCCAAAAATCAT
261 CATTGTGGCTGAGATTTGGGATGAATAATATAGATATTTCAATAAGTCTTGGCTCCAAAAATCAT
1318 GCAAAACT
326 GCAAAACT
* * * *
1326 GAGCCGGGGCACCGGAACGCGTCTTTAGCCAAAAACCTTGATGGTTAGTAAACGATTTCGGCAAA
1 GAGCCGGGGCACCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCTGCAAA
* * *
1391 AAATTTGCCAAAATTGACCCGAAACATTTTTCCTCAATTTTTAACCACAATAC-TG-ATAAAAAT
66 AAATTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACATGTA-AAAAAT
* *
1454 ATATAATTCAACGCCAAAAAGATTGAAGGGTTTTTCACGCTTCTAATATCATATTTTCAATTCTT
130 ATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCATTTTTTCAATTCTT
* * * *
1519 TCCCGAATTAATCTCTAAAT-AATCGAAACAAGAATCAGATGATCGTAAAAACAAATCCTTACAT
195 TCCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGATCGTAAAAACAAATCCTTAAAT
* * * *
1583 CCATTGTGGCTAAGATTTGGGAAGATTAATATAGATATTTCAATGAGTCTTGG-TGCCAAAAATC
260 CCATTGTGGCTGAGATTTGGGATGAATAATATAGATATTTCAATAAGTCTTGGCT-CCAAAAATC
*
1647 ATGTAAAACT
324 ATGCAAAACT
**
1657 GAGTAGGGGCACCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCTGCAAA
1 GAGCCGGGGCACCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCTGCAAA
* *
1722 AAATTTGCCAAAATTGACTCGAAAGATTTTTCCTCAATTTTTAACCGCAATACATGTAAAAAATA
66 AAATTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACATGTAAAAAATA
*
1787 TATAATTCAACGCCAAAAAGATTGAAGGGCTTTTAACGCTTCTAATATCATTTTTTCAATTCTTT
131 TATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCATTTTTTCAATTCTTT
* *
1852 CCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGATCGTAAAAACATATCCTTAAAAC
196 CCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGATCGTAAAAACAAATCCTTAAATC
* *
1917 CATGGTGGCTGAGATTTGGGATTAATAATATAGATATTTCAATAAGTCTTGGCTCCAAAAATCAT
261 CATTGTGGCTGAGATTTGGGATGAATAATATAGATATTTCAATAAGTCTTGGCTCCAAAAATCAT
1982 GCAAAACT
326 GCAAAACT
* ** * * ** *
1990 GATCCGGGGCACCGGAAATCGTCTTTAGCCAAAAACCATGATGGTTTTTGAC-C-ATCAATCTGC
1 GAGCCGGGGCACCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGT-ACACGAT--TTCTGC
* *
2053 AAAAAATTTGCAAAAATTGACCCGAAAAATTTTTCCTCAATTTTTAACCACAATACATGTAAAAA
63 AAAAAATTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACATGTAAAAA
2118 ATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTT--CGCTTCTAATATCATTTTTTCAATTC
128 ATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCATTTTTTCAATTC
* *
2181 TTTCCAGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGATCGAAAAAACAAATCCTTAA
193 TTTCCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGATCGTAAAAACAAATCCTTAA
* * *
2246 ATCCATTGTGGCTGAGATTTGGGATGATTAATAAAAATGA-TTCAATAAGTCTTGGCTCCAAAAA
258 ATCCATTGTGGCTGAGATTTGGGATGAATAATATAGAT-ATTTCAATAAGTCTTGGCTCCAAAAA
2310 TCATGCAAAACT
322 TCATGCAAAACT
* * * * *
2322 GAGCCGGGGCGCCGGAACGCATTTTTAGCCAAAAACTGTGATGGTTAGTATACGATTTCGGCAAA
1 GAGCCGGGGCACCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCTGCAAA
* ** * ** * * *
2387 AATTTTGCAAAAATTGAGTCGAAAGATTTTTTCAAAATTTTTAACCACAGTAC-T-AATAAAAAT
66 AAATTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACATGTA-AAAAAT
* * *
2450 ATATAATTCAATGCCAAAAAGATTGAAAGGTTTTTCACGCTTCTAATATCATTTTTTCAATTCTT
130 ATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCATTTTTTCAATTCTT
* * *
2515 TCCGGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATCATCGTAAAAACAAATTCTTAAAT
195 TCCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGATCGTAAAAACAAATCCTTAAAT
* * * *
2580 CCATTTTGGCTGAGATTTGGGATGAATTATATAGATGTATCAATAAGTCTTGGCTCCAAAAATCA
260 CCATTGTGGCTGAGATTTGGGATGAATAATATAGATATTTCAATAAGTCTTGGCTCCAAAAATCA
2645 TGCAAAACT
325 TGCAAAACT
* * *
2654 GAGCCGAGGCAACGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACCATTTCTGCAAA
1 GAGCCGGGGCACCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCTGCAAA
* * *
2719 AAATTTGCAAAAATTGACCCGAAAAATTTTTCCACAATTTTTAACCGTAATACATGTAAAAAATA
66 AAATTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACATGTAAAAAATA
2784 TATAATTC-ACTGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCATTTTTTCAATTCTT
131 TATAATTCAAC-GCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCATTTTTTCAATTCTT
*
2848 TCCAGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGATCGTAAAAACAAATCCTTAAAT
195 TCCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGATCGTAAAAACAAATCCTTAAAT
* * *
2913 CCCTTGTGGCTGAGATTTGGGATGATTAATATAGATATTTCAATGA-TACTTGGCTCCAAAAATC
260 CCATTGTGGCTGAGATTTGGGATGAATAATATAGATATTTCAATAAGT-CTTGGCTCCAAAAATC
2977 ATGCAAAACT
324 ATGCAAAACT
* * * * * *
2987 GATCTGGGGCACCGGAACGCATCTTTATCTAAAAACCGTGATGGTTAGTACACGATTTCTGCAAA
1 GAGCCGGGGCACCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCTGCAAA
* * ** *
3052 AAATTTGCCAAAATTGACTCGAAAGATTTTTCCTCAATTTTTAACCATAGTAC-TGATAAAAAAT
66 AAATTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACATG-TAAAAAAT
3116 ATATAATTCAACGC
130 ATATAATTCAACGC
3130 GTTTTTGGCC
Statistics
Matches: 2533, Mismatches: 230, Indels: 68
0.89 0.08 0.02
Matches are distributed among these distances:
329 60 0.02
330 341 0.13
331 488 0.19
332 1069 0.42
333 466 0.18
334 109 0.04
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.31
Consensus pattern (333 bp):
GAGCCGGGGCACCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCTGCAAA
AAATTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACATGTAAAAAATA
TATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCATTTTTTCAATTCTTT
CCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGATCGTAAAAACAAATCCTTAAATC
CATTGTGGCTGAGATTTGGGATGAATAATATAGATATTTCAATAAGTCTTGGCTCCAAAAATCAT
GCAAAACT
Found at i:3234 original size:114 final size:114
Alignment explanation
Indices: 3034--3243 Score: 330
Period size: 114 Copynumber: 1.8 Consensus size: 114
3024 GTGATGGTTA
* * * * * **
3034 GTACACGATTTCTGCAAAAAATTTGCCAAAATTGACTCGAAAGATTTTTCCTCAATTTTTAACCA
1 GTACACGATTTCGGCAAAAAATTTACAAAAATTGACCCGAAAGAATTTTCCAAAATTTTTAACCA
3099 TAGTACTGATAAAAAATATATAATTCAACGCGTTTTTGGCCAAAAACCG
66 TAGTACTGATAAAAAATATATAATTCAACGCGTTTTTGGCCAAAAACCG
* *
3148 GTACATGATTTCGGCAAAAATTTTACAAAAATTGACCCGAAAGAATTTTCCAAAATTTTTAACCA
1 GTACACGATTTCGGCAAAAAATTTACAAAAATTGACCCGAAAGAATTTTCCAAAATTTTTAACCA
*
3213 TAGTACTGATAAAAAGTATATAATTCAACGC
66 TAGTACTGATAAAAAATATATAATTCAACGC
3244 CAAAAAGATT
Statistics
Matches: 86, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
114 86 1.00
ACGTcount: A:0.40, C:0.17, G:0.12, T:0.31
Consensus pattern (114 bp):
GTACACGATTTCGGCAAAAAATTTACAAAAATTGACCCGAAAGAATTTTCCAAAATTTTTAACCA
TAGTACTGATAAAAAATATATAATTCAACGCGTTTTTGGCCAAAAACCG
Found at i:3561 original size:447 final size:448
Alignment explanation
Indices: 2708--3577 Score: 1272
Period size: 447 Copynumber: 1.9 Consensus size: 448
2698 TTAGTACACC
* * * *
2708 ATTTCTGCAAAAAATTTGCAAAAATTGACCCGAAAAATTTTTCCACAATTTTTAACCGTAATACA
1 ATTTCGGCAAAAAATTTACAAAAATTGACCCGAAAAATTTTTCCAAAATTTTTAACCATAATACA
*
2773 TGTAAAAAATATATAATTCACTGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCATTTT
66 TGTAAAAAATATATAATTCACTGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATAATTTT
* * *
2838 TTCAATTCTTTCCAGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGATCGTAAAAACAA
131 TTCAATTCTTTCCAGAATTAATCTCTAACTAAATCGAAACAAGATTCAAATGATCGTAAAAACAA
* * * * *
2903 ATCCTTAAATCCCTTGTGGCTGAGATTTGGGATGATTAATATAGATATTTCAATGATACTTGGCT
196 ATCCTTAAATACATTGTGGCTAAGATTTGGGATAATTAACATAGATATTTCAATGATACTTGGCT
* * * * * *
2968 CCAAAAATCATGCAAAACTGATCTGGGGCACCGGAACGCATCTTTATCTAAAAACCGTGATGGTT
261 CCAAAAATCATGAAAAACTGATCTGGGGCACCAGAACACATCTTTAGCCAAAAACCGTGATGGTA
* * * *
3033 AGTACACGATTTCTGCAAAAAATTTGCCAAAATTGACTCGAAAGATTTTTCCTCAATTTTTAACC
326 AATACACGATTTCGGCAAAAAATTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACC
* *
3098 ATAGTACTGAT-AAAAAATATATAATTCAACGCGTTTTTGGCCAAAAACCGGTACATG
391 ACAGTACTGATAAAAAAATATACAATTCAACGCGTTTTTGGCCAAAAACCGGTACATG
* *
3155 ATTTCGGCAAAAATTTTACAAAAATTGACCCGAAAGAA-TTTTCCAAAATTTTTAACCATAGTAC
1 ATTTCGGCAAAAAATTTACAAAAATTGACCCGAAA-AATTTTTCCAAAATTTTTAACCATAATAC
* *
3219 -TGATAAAAAGTATATAATTCAAC-GCCAAAAAGATTGAAGGGTTTTTCACGCTTCTAATATAAT
65 ATG-TAAAAAATATATAATTC-ACTGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATAAT
*
3282 TTTTTCAATTCTTTCCCGAATTAATCTCTAACTAAATCGAAACAAGATTCAAATGATCGTAAAAA
128 TTTTTCAATTCTTTCCAGAATTAATCTCTAACTAAATCGAAACAAGATTCAAATGATCGTAAAAA
3347 CAAATCCTTAAATACATTGTGGCTAAGATTTGGGATAATTAACATAGATATTTCAATGAGT-CTT
193 CAAATCCTTAAATACATTGTGGCTAAGATTTGGGATAATTAACATAGATATTTCAATGA-TACTT
* * *
3411 GG-TGCCAAAAATCATGAAAAACTGAGTC-GGGGCACCAGACCACGTTTTTAGCCAAAAACCGTG
257 GGCT-CCAAAAATCATGAAAAACTGA-TCTGGGGCACCAGAACACATCTTTAGCCAAAAACCGTG
* * *
3474 AT-GTAACATACATGATTTCGGCAAAAATTTTGCAAAAATTGACCCGGAAGATTTTTCCTCAATT
320 ATGGTAA-ATACACGATTTCGGCAAAAAATTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATT
*
3538 TTTAACCACATTACTCG-TAAAAAAATATACAATTCAACGC
384 TTTAACCACAGTACT-GATAAAAAAATATACAATTCAACGC
3578 CAAAAAGATT
Statistics
Matches: 377, Mismatches: 37, Indels: 17
0.87 0.09 0.04
Matches are distributed among these distances:
446 6 0.02
447 343 0.91
448 28 0.07
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.31
Consensus pattern (448 bp):
ATTTCGGCAAAAAATTTACAAAAATTGACCCGAAAAATTTTTCCAAAATTTTTAACCATAATACA
TGTAAAAAATATATAATTCACTGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATAATTTT
TTCAATTCTTTCCAGAATTAATCTCTAACTAAATCGAAACAAGATTCAAATGATCGTAAAAACAA
ATCCTTAAATACATTGTGGCTAAGATTTGGGATAATTAACATAGATATTTCAATGATACTTGGCT
CCAAAAATCATGAAAAACTGATCTGGGGCACCAGAACACATCTTTAGCCAAAAACCGTGATGGTA
AATACACGATTTCGGCAAAAAATTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACC
ACAGTACTGATAAAAAAATATACAATTCAACGCGTTTTTGGCCAAAAACCGGTACATG
Found at i:3603 original size:334 final size:331
Alignment explanation
Indices: 3149--6293 Score: 3462
Period size: 334 Copynumber: 9.5 Consensus size: 331
3139 CAAAAACCGG
* * * ** *
3149 TACATGATTTCGGCAAAAATTTTACAAAAATTGACCCGAAAGAATTTTCCAAAATTTTTAACCAT
1 TACACGATTTCGGCAAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCAC
* * *
3214 AGTACT-GATAAAAAGTATATAATTCAACGCCAAAAAGATTGAAGGGTTTTTCACGCTTCTAATA
66 AATACTCG-TAAAAAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATA
* * * *
3278 TAATTTTTTCAATTCTTTCCCGAATTAATCTCTAACTAAATCGAAACAAGATTCAAATGATCGTA
130 TCATTTTTTCAATT-TTTCCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGATCGTA
* * * *
3343 AAAACAAATCCTTAAATACATTGTGGCTAAGATTTGGGATAATTAACATAGATATTTCAATGAGT
194 AAAACAAATCCTTAAATCCATTGTGGCTGAGATTTGGGATGATTAATATAGATATTTCAATGAGT
* * * *
3408 CTTGGTGCCAAAAATCATGAAAAACTGAGTCGGGGCACCAGACCACGTTTTTAGCCAAAAACCGT
259 CTTGGCGCCAAAAATCATGCAAAACTGAGTCGGGGCACCGGAACACGTTTTTAGCCAAAAACCGT
*
3473 GAT-GTAACA
324 GATGGT--TA
* *
3482 TACATGATTTCGGCAAAAATTTTGCAAAAATTGACCCGGAAGATTTTTCCTCAATTTTTAACCAC
1 TACACGATTTCGGCAAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCAC
* *
3547 ATTACTCGTAAAAAAATATACAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATA
66 AATACTCGT-AAAAAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATA
*
3612 TCATTTTTTCAATTCTTTCCCGAATTAATTTCTAATTAGATCGAAACAAGATTCAGATGATCGTA
130 TCATTTTTTCAATT-TTTCCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGATCGTA
* *
3677 AAAACAAATTCTTAAATCCATTGTGACTGAGATTTGGGATGATTAATATAGATATTTCAATGAGT
194 AAAACAAATCCTTAAATCCATTGTGGCTGAGATTTGGGATGATTAATATAGATATTTCAATGAGT
* * * *
3742 ATTGCCGCCAAAAATCATGCAAAACTGAGTCGGGGCACCTGAACGCGTTTTTAGCCAAAAACCGT
259 CTTGGCGCCAAAAATCATGCAAAACTGAGTCGGGGCACCGGAACACGTTTTTAGCCAAAAACCGT
3807 GATGG---
324 GATGGTTA
* * * *
3812 TACACGATTTCGGCCAAAACTTTGCAAAAATTGACCCGAATGATTTTTCCTCAATTTTTAACCAT
1 TACACGATTTCGGCAAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCAC
* * * * *
3877 AGTACTTGTAAAAAGTATATAATTCAACGCCAAAAAGATAGAATGGCTTTTCACGCTTCTAATAT
66 AATACTCGTAAAAAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATAT
*
3942 CATTTTTTCAATTCTTTCCCGAATTAATTTCTAATTAAATCGAAACAAGATTCATATGATCGTAA
131 CATTTTTTCAATT-TTTCCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGATCGTAA
*
4007 AAACAAATTCTTAAATCCATTGTGGCTGAGATTTGGGATGATTAATATAGATATTTCAATGAGTC
195 AAACAAATCCTTAAATCCATTGTGGCTGAGATTTGGGATGATTAATATAGATATTTCAATGAGTC
* * * * *
4072 ATGGAGCCAAAAATCATGCAAAATTGAGTTGGGGC-CTCGGAACACATTTTTAGCCAAAAACCGT
260 TTGGCGCCAAAAATCATGCAAAACTGAGTCGGGGCAC-CGGAACACGTTTTTAGCCAAAAACCGT
*
4136 GAT-GAT-
324 GATGGTTA
* * ** * *
4142 TACGCAATTTCGGCAAAAAAATTGTAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTTATCCA
1 TACACGATTTCGGCAAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAA-TTTTTAACCA
* * *
4207 CAGTACTCGTAAAAAATATATAATTCAATC-CCAAAAATATTGAAGCGCTTTTCACGCTTCTAAT
65 CAATACTCGTAAAAAATATATAATTCAA-CGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAAT
* * *
4271 ATCATTTTTTCATTTCTTTCCCGAATTAATTTTCTAATTAAATTGAAACAAGATTCAAATGATCG
129 ATCATTTTTTCAATT-TTTCCCGAATTAA-TTTCTAATTAAATCGAAACAAGATTCAGATGATCG
* * *
4336 TAAAAACAAATCCTTAAATCCATTGTGGCTGAGATTTGGGATGATTGATATGGTTATTTCAATGA
192 TAAAAACAAATCCTTAAATCCATTGTGGCTGAGATTTGGGATGATTAATATAGATATTTCAATGA
* * * * *
4401 GTCTTAGCGCCAAAAATCATGCAAAACTTAGTCGGCGCACCGGAACGCTTTTTTAGCCAAAAACC
257 GTCTTGGCGCCAAAAATCATGCAAAACTGAGTCGGGGCACCGGAACACGTTTTTAGCCAAAAACC
4466 GTGATGGTTA
322 GTGATGGTTA
* * * * *
4476 GCACACGATTTCGGCAAAAACTTTGCAAAAATTGACCCGAATGATTTTTCCTTAATTTTTAACCG
1 -TACACGATTTCGGCAAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCA
* * *
4541 CAATACTCGTAAAAAATTTATAATTCAACACCAAAAATATTGAAGGGCTTTTCACGCTTCTAATA
65 CAATACTCGTAAAAAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATA
* *
4606 TCATTTTTTCAATTTCTTCCCAAATTAATTTCTATTTAAATCGAAACAAGATTCAGATGATCGTA
130 TCATTTTTTCAATTT-TTCCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGATCGTA
**
4671 AAAACAAATCCTTAAATCCATTGTGGCTGATTTTTGGGATGATTAATATAGATATTTC-ATGAGT
194 AAAACAAATCCTTAAATCCATTGTGGCTGAGATTTGGGATGATTAATATAGATATTTCAATGAGT
* *
4735 CTTGGCTCCAAAAATCATGCAAAACTGAGTCGGGGCACCGGAACACGTCTTTAGCCAAAAACCGT
259 CTTGGCGCCAAAAATCATGCAAAACTGAGTCGGGGCACCGGAACACGTTTTTAGCCAAAAACCGT
4800 GATGGTTA
324 GATGGTTA
* * * * *
4808 GTACACGATTTCAGCAAAAACTTTGCAAAAAGTT-ACCTGAAAGATTTTTCCTTAATTTTGAACC
1 -TACACGATTTCGGCAAAAATTTTGCAAAAA-TTGACCCGAAAGATTTTTCCTCAATTTTTAACC
* * * * * *
4872 GCAATACTCAT-AAAAATATATAATTCAACGACAAAAAGATTGAAGGGTTTTTCAGGCGTCTAAT
64 ACAATACTCGTAAAAAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAAT
** *
4936 ATCAATTGTTTTTCAATTTTT-CC-ATATTAATTTCCGATTAAATCGAAACAAGATTCAGATGCT
129 ATC-A-T-TTTTTCAATTTTTCCCGA-ATTAATTTCTAATTAAATCGAAACAAGATTCAGATGAT
* * * * *
4999 TGTAAAATCAAATCCTTAAATCCATTGTGGCTAAGTTTTGCGATGATTAATATAGATATTTCAAT
190 CGTAAAAACAAATCCTTAAATCCATTGTGGCTGAGATTTGGGATGATTAATATAGATATTTCAAT
* * * ** * * * *
5064 GAATCTTGACGCCAAAAATCATGCAAAACTAAGAT-AAGGCCCCAGAACGCATTTTTAGCCAAAA
255 GAGTCTTGGCGCCAAAAATCATGCAAAACTGAG-TCGGGGCACCGGAACACGTTTTTAGCCAAAA
*
5128 ACTGTGATGGTTA
319 ACCGTGATGGTTA
* * * * *
5141 GTACCCGATTTCGACAAAAATTTTGCAAAAATTGACCTGAAAGATTTTTTTCTCAATTTTTAACT
1 -TACACGATTTCGGCAAAAATTTTGCAAAAATTGACCCGAAAGA-TTTTTCCTCAATTTTTAACC
* ** * *
5206 GCAATTTTCGTAAAAAATATATAATTCAACGCCAAAAAGATTGATGGTCTTTTCACGCTTCTAAT
64 ACAATACTCGTAAAAAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAAT
* *
5271 ATCATTTTTTCAATTTTTTCGCGAATTAATTTCTATTTAAATCGAAACAAGATTCAGATGATCGT
129 ATCATTTTTTCAA-TTTTTCCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGATCGT
* * *
5336 AAAAACAAATCCTTAAATCCATTGTGGCTGAAATTTGTGATGATTAATATAGATATTTCAAGGAG
193 AAAAACAAATCCTTAAATCCATTGTGGCTGAGATTTGGGATGATTAATATAGATATTTCAATGAG
* * * * * *
5401 TCTTGACCCCAAAAATCATGCAAAACTGAGCCCGAGC-CTC-GAA-ACGGTTTTCTAGACAAAAA
258 TCTTGGCGCCAAAAATCATGCAAAACTGAGTCGGGGCAC-CGGAACAC-GTTTT-TAGCCAAAAA
*
5463 CGGTGATGGTTA
320 CCGTGATGGTTA
* * * * * * ****
5475 TTACACGATTTCGGCTAAAATTTTGTAAATACTGACCCGAAAGATATATCCTCAATTTTTGGGTA
1 -TACACGATTTCGGCAAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCA
* * * * *
5540 AAATACTCATAAAAAA-A-AT-A-T---CGCCAAAAAGATTGAAGGGTTTTTGACGCTTCTATTA
65 CAATACTCGTAAAAAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATA
* * * * * * * * *
5598 TCGTTTTTCCTATTTTTCCCAAATTGATTTTTAATTAAATTGAAACTAGATTCAGATGCTCGTAA
130 TCATTTTTTCAATTTTTCCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGATCGTAA
* * * * * *
5663 AAGCAAATCTTTAAATCCAATGTGGCTGAAATTT--GATTAAATGAATATAGATATTTCAA-GTA
195 AAACAAATCCTTAAATCCATTGTGGCTGAGATTTGGGA-T-GATTAATATAGATATTTCAATG-A
* * * * * * * * * ** *
5725 -TCCTCGGAGCAAAAAATCTTGCAAACCTGAGTCAGGACCCCGCAACGTGTTTTTAGCTAAAAAA
257 GT-CTTGGCGCCAAAAATCATGCAAAACTGAGTCGGGGCACCGGAACACGTTTTTAGC-CAAAAA
* *
5789 ACGAGATGGTTA
320 CCGTGATGGTTA
* * ** * * * * *
5801 GTATACGATTTTGGTTAAAATTTTGCAAAAAATGACCCGAAAAAGTTTTCCTCAATTTTTGGA-T
1 -TACACGATTTCGGCAAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTT-AACC
* * * * * * * * * * ** *
5865 AAAATATTCATAAAATATAAATAATTTAACACTAAAAATATTGGAGTACTTTTCACGCTTTTAAT
64 ACAATACTCGTAAAAAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAAT
* *** * * * * * *
5930 ATC-GTTTTTCATATTTTTTTTGAATCAATTTTTAATTAAATCGAAACAAGATTCAAATGCTTGC
129 ATCATTTTTTCA-ATTTTTCCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGATCGT
** * * * * * *
5994 AAAAACAAATTTTTAAATCC-TATGTGGCTGAGAATT--GATTAGATGAATATGGATATCTCTAG
193 AAAAACAAATCCTTAAATCCAT-TGTGGCTGAGATTTGGGA-T-GATTAATATAGATATTTCAAT
** * * * *
6056 GAGTCTTGGCGCTTAAAATCATGCAAAACTGAGTCGAGGCCCCGGAACGCTTTTTTAGCCAAAAA
255 GAGTCTTGGCGCCAAAAATCATGCAAAACTGAGTCGGGGCACCGGAACACGTTTTTAGCCAAAAA
* *
6121 CTGTAATGGTTA
320 CCGTGATGGTTA
* * * ** * ** *
6133 TTACACAATTTCGGCTAAAATTTTGTAATGATTGACCCCG-AAGATATTTCCTCAATTTTTGGCT
1 -TACACGATTTCGGCAAAAATTTTGCAAAAATTGA-CCCGAAAGATTTTTCCTCAATTTTTAACC
* * * * * *
6197 AAAATACTCATAAAAAAATATATAATTCAACACCGAAAAGATTGAAGGGCTTTTGACGCTTCCAA
64 ACAATACTCGT-AAAAAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAA
* * *
6262 TATCGTTTTTCCTATTTTTCCCGAATTAATTT
128 TATCATTTTTTCAATTTTTCCCGAATTAATTT
6294 ATTCTCAATA
Statistics
Matches: 2412, Mismatches: 344, Indels: 112
0.84 0.12 0.04
Matches are distributed among these distances:
323 2 0.00
324 3 0.00
325 124 0.05
326 128 0.05
327 2 0.00
328 4 0.00
329 237 0.10
330 115 0.05
331 145 0.06
332 470 0.19
333 533 0.22
334 551 0.23
335 98 0.04
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.33
Consensus pattern (331 bp):
TACACGATTTCGGCAAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCAC
AATACTCGTAAAAAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATAT
CATTTTTTCAATTTTTCCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGATCGTAAA
AACAAATCCTTAAATCCATTGTGGCTGAGATTTGGGATGATTAATATAGATATTTCAATGAGTCT
TGGCGCCAAAAATCATGCAAAACTGAGTCGGGGCACCGGAACACGTTTTTAGCCAAAAACCGTGA
TGGTTA
Found at i:11662 original size:2 final size:2
Alignment explanation
Indices: 11655--11693 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
11645 AACTTAATTA
11655 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
11694 GATGTCGACA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:15702 original size:56 final size:56
Alignment explanation
Indices: 15635--15746 Score: 224
Period size: 56 Copynumber: 2.0 Consensus size: 56
15625 ACTTTAACTT
15635 GGTATTGCCATTGTGATTAGGGATATAGTTAACCGGTCCGTTGACTTCCGGTTATA
1 GGTATTGCCATTGTGATTAGGGATATAGTTAACCGGTCCGTTGACTTCCGGTTATA
15691 GGTATTGCCATTGTGATTAGGGATATAGTTAACCGGTCCGTTGACTTCCGGTTATA
1 GGTATTGCCATTGTGATTAGGGATATAGTTAACCGGTCCGTTGACTTCCGGTTATA
15747 TATATGTGAC
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.21, C:0.16, G:0.27, T:0.36
Consensus pattern (56 bp):
GGTATTGCCATTGTGATTAGGGATATAGTTAACCGGTCCGTTGACTTCCGGTTATA
Found at i:15966 original size:130 final size:130
Alignment explanation
Indices: 15733--16124 Score: 748
Period size: 130 Copynumber: 3.0 Consensus size: 130
15723 CCGGTCCGTT
* * *
15733 GACTTCCGGTTATATATATGTGACGGAACCAACTGATATAGGGGATCTCCACCTTCGCAAAGGTT
1 GACTTCCGATTATATGTATGTGACGGAACCAACTGATATAGGGGAACTCCACCTTCGCAAAGGTT
15798 GAATTCCATCATAAGTATTGCCATTGTGATTAGGGATGAAGAGATTTCAGGGGAAGAGAAAGGGA
66 GAATTCCATCATAAGTATTGCCATTGTGATTAGGGATGAAGAGATTTCAGGGGAAGAGAAAGGGA
15863 GACTTCCGATTATATGTATGTGACGGAACCAACTGATATAGGGGAACTCCACCTTCGCAAAGGTT
1 GACTTCCGATTATATGTATGTGACGGAACCAACTGATATAGGGGAACTCCACCTTCGCAAAGGTT
15928 GAATTCCATCATAAGTATTGCCATTGTGATTAGGGATGAAGAGATTTCAGGGGAAGAGAAAGGGA
66 GAATTCCATCATAAGTATTGCCATTGTGATTAGGGATGAAGAGATTTCAGGGGAAGAGAAAGGGA
15993 GACTTCCGATTATATGTATGTGACGGAACCAACTGATATAGGGGAACTCCACCTTCGCAAAGGTT
1 GACTTCCGATTATATGTATGTGACGGAACCAACTGATATAGGGGAACTCCACCTTCGCAAAGGTT
*
16058 GAATTCCATCATAAGTATTGCCATTGTGATTAGGGATGAAGAGATTTCAAGGGAAGAGAAAGGGA
66 GAATTCCATCATAAGTATTGCCATTGTGATTAGGGATGAAGAGATTTCAGGGGAAGAGAAAGGGA
16123 GA
1 GA
16125 GGGTTATTGG
Statistics
Matches: 258, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
130 258 1.00
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.26
Consensus pattern (130 bp):
GACTTCCGATTATATGTATGTGACGGAACCAACTGATATAGGGGAACTCCACCTTCGCAAAGGTT
GAATTCCATCATAAGTATTGCCATTGTGATTAGGGATGAAGAGATTTCAGGGGAAGAGAAAGGGA
Found at i:16282 original size:46 final size:46
Alignment explanation
Indices: 16215--16307 Score: 177
Period size: 46 Copynumber: 2.0 Consensus size: 46
16205 GGGAATGGAT
16215 GCGCTAATTATAACTATAGATTGACATATCAATCACATTCGGAAAA
1 GCGCTAATTATAACTATAGATTGACATATCAATCACATTCGGAAAA
*
16261 GCGCTAATTATAACTATAGATTGGCATATCAATCACATTCGGAAAA
1 GCGCTAATTATAACTATAGATTGACATATCAATCACATTCGGAAAA
16307 G
1 G
16308 TCTTTTATGG
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.40, C:0.17, G:0.15, T:0.28
Consensus pattern (46 bp):
GCGCTAATTATAACTATAGATTGACATATCAATCACATTCGGAAAA
Found at i:23097 original size:93 final size:87
Alignment explanation
Indices: 22830--23097 Score: 446
Period size: 87 Copynumber: 3.0 Consensus size: 87
22820 TTGCCAACAC
*
22830 GTATTCATGGCACATAATATGAGTTTGAGTTAGCACCATAGGATAGGTGACAAAAGCCAAACCAT
1 GTATCCATGGCACATAATATGAGTTTGAGTTAGCACCATAGGATAGGTGACAAAAGCCAAACCAT
22895 GGTTTTATAGCTCAAGAAAGAT
66 GGTTTTATAGCTCAAGAAAGAT
22917 GTATCCATGGCACATAATATGAGTTTGAGTTAGCACCATAGGATAGGTGACAAAAGCCAAACCAT
1 GTATCCATGGCACATAATATGAGTTTGAGTTAGCACCATAGGATAGGTGACAAAAGCCAAACCAT
22982 GGTTTTATAGCTCAAGAAAGAT
66 GGTTTTATAGCTCAAGAAAGAT
* *
23004 GTATCCATGGCACATAATATGAGTTGAAGTTTGAGTTAGCACCATAGGACAGGTGAGAAAAGCCA
1 GTATCCATGGCACAT-A-AT-A--TG-AGTTTGAGTTAGCACCATAGGATAGGTGACAAAAGCCA
*
23069 AACCTTGGTTTTATAGCTCAAGAAAGAT
60 AACCATGGTTTTATAGCTCAAGAAAGAT
23097 G
1 G
23098 CTCATTCAGT
Statistics
Matches: 171, Mismatches: 4, Indels: 6
0.94 0.02 0.03
Matches are distributed among these distances:
87 101 0.59
88 1 0.01
89 2 0.01
90 1 0.01
92 2 0.01
93 64 0.37
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (87 bp):
GTATCCATGGCACATAATATGAGTTTGAGTTAGCACCATAGGATAGGTGACAAAAGCCAAACCAT
GGTTTTATAGCTCAAGAAAGAT
Found at i:34858 original size:114 final size:114
Alignment explanation
Indices: 34658--34874 Score: 398
Period size: 114 Copynumber: 1.9 Consensus size: 114
34648 CAGGTTTCAG
* * *
34658 ATTCGAGACCTTGCGTATGCAGCCTCCCCTGTTTGGAGACTCACCCACCATAACCAGGTGCGTGA
1 ATTCGAGACCTTGCGTACGCAGCCTCCCCTGTTGGGAGACTCACCCACCATAACCAGGTGCGCGA
34723 CGCGGGTGTAATATACTTATGAGCCAAAATTGCACGTGCTAGAAACCAA
66 CGCGGGTGTAATATACTTATGAGCCAAAATTGCACGTGCTAGAAACCAA
*
34772 ATTCGAGACTTTGCGTACGCAGCCTCCCCTGTTGGGAGACTCACCCACCATAACCAGGTGCGCGA
1 ATTCGAGACCTTGCGTACGCAGCCTCCCCTGTTGGGAGACTCACCCACCATAACCAGGTGCGCGA
34837 CGCGGGTGTAATATACTTATGAGCCAAAATTGCACGTG
66 CGCGGGTGTAATATACTTATGAGCCAAAATTGCACGTG
34875 AGCCTCCCCT
Statistics
Matches: 99, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
114 99 1.00
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.23
Consensus pattern (114 bp):
ATTCGAGACCTTGCGTACGCAGCCTCCCCTGTTGGGAGACTCACCCACCATAACCAGGTGCGCGA
CGCGGGTGTAATATACTTATGAGCCAAAATTGCACGTGCTAGAAACCAA
Found at i:34931 original size:83 final size:83
Alignment explanation
Indices: 34792--34957 Score: 323
Period size: 83 Copynumber: 2.0 Consensus size: 83
34782 TTGCGTACGC
*
34792 AGCCTCCCCTGTTGGGAGACTCACCCACCATAACCAGGTGCGCGACGCGGGTGTAATATACTTAT
1 AGCCTCCCCTGTTGGGAGACTCACCCACCATAACCAGGTGCGCAACGCGGGTGTAATATACTTAT
34857 GAGCCAAAATTGCACGTG
66 GAGCCAAAATTGCACGTG
34875 AGCCTCCCCTGTTGGGAGACTCACCCACCATAACCAGGTGCGCAACGCGGGTGTAATATACTTAT
1 AGCCTCCCCTGTTGGGAGACTCACCCACCATAACCAGGTGCGCAACGCGGGTGTAATATACTTAT
34940 GAGCCAAAATTGCACGTG
66 GAGCCAAAATTGCACGTG
34958 CTAACCAAAT
Statistics
Matches: 82, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 82 1.00
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.20
Consensus pattern (83 bp):
AGCCTCCCCTGTTGGGAGACTCACCCACCATAACCAGGTGCGCAACGCGGGTGTAATATACTTAT
GAGCCAAAATTGCACGTG
Done.