Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012369.1 Corchorus olitorius cultivar O-4 contig12402, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30090

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
919--1062
54
2.7
54
87
0
189
31
15
19
34
1.93
1053--1895
35
23.8
34
82
10
882
27
13
18
40
1.88
1081--1206
63
2.0
63
90
0
198
32
13
16
37
1.88
1349--1406
19
3.2
19
67
30
54
24
15
20
39
1.91
1053--1895
142
6.0
140
83
7
800
27
13
18
40
1.88
1053--1890
178
4.7
184
85
7
743
27
13
18
40
1.88
9387--9433
23
2.0
23
87
0
67
14
31
38
14
1.87
9823--9864
16
2.7
16
92
3
68
23
0
21
54
1.44
11232--11321
45
2.1
43
91
6
146
37
22
5
34
1.77
15568--15652
22
4.0
21
75
7
73
36
17
11
34
1.86
15591--15734
21
6.7
21
68
13
71
34
14
9
40
1.79
15706--15758
22
2.4
22
77
0
61
24
13
9
52
1.69
18403--18438
19
1.9
18
88
5
54
33
22
2
41
1.68

Tables:   1

The End!