Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012370.1 Corchorus olitorius cultivar O-4 contig12403, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55474

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1444--1476
17
1.9
17
93
0
57
36
0
51
12
1.39
3161--3236
27
2.8
28
92
6
120
43
26
14
15
1.85
5286--5331
18
2.6
18
96
0
83
26
36
13
23
1.91
13074--13105
1
32.0
1
100
0
64
100
0
0
0
0.00
21742--21776
11
3.2
11
83
0
52
77
17
5
0
0.96
24695--24856
60
2.7
60
86
1
209
35
18
17
28
1.93
25692--25881
99
1.9
99
93
0
326
33
17
15
33
1.91
28620--28978
180
2.0
180
95
0
646
22
21
15
41
1.90
29788--29854
30
2.3
29
85
12
84
46
11
10
31
1.75
30212--30239
1
28.0
1
100
0
56
100
0
0
0
0.00
30676--30733
19
2.9
20
82
5
73
36
12
20
31
1.89
30670--30733
21
3.1
21
77
8
78
35
10
21
31
1.88

Tables:   1

The End!