Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012373.1 Corchorus olitorius cultivar O-4 contig12406, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29149

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1822--1867
13
3.5
13
77
16
58
26
8
32
32
1.87
1832--1873
14
3.1
14
74
19
52
33
7
30
28
1.84
1822--1873
27
1.9
27
100
0
104
30
7
30
30
1.85
5911--5962
25
2.1
25
96
0
95
30
21
9
38
1.85
9830--9881
25
2.1
25
92
0
86
32
19
9
38
1.84
11670--11710
21
2.0
21
90
0
64
34
19
14
31
1.92
16814--16893
3
26.7
3
100
0
160
67
0
0
32
0.91
19044--19107
11
5.5
11
71
14
56
23
17
17
42
1.89
19033--19128
24
4.0
24
97
2
176
25
16
15
42
1.87
19033--19121
13
7.3
13
70
14
82
25
15
16
41
1.88
26986--27049
33
1.9
33
93
0
110
40
12
20
26
1.88
27623--27652
14
2.1
14
93
0
51
40
6
6
46
1.56
27633--28045
203
2.0
203
92
2
699
33
18
18
29
1.95
28136--28178
23
2.0
22
86
9
61
39
16
20
23
1.92

Tables:   1

The End!