Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012376.1 Corchorus olitorius cultivar O-4 contig12409, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  126669

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1495--1546
26
2.0
26
88
0
77
46
13
7
32
1.72
1497--1553
26
2.2
26
83
0
69
47
15
7
29
1.72
7115--7375
106
2.5
105
89
2
400
40
8
8
42
1.66
7606--7682
29
2.6
28
80
12
75
48
12
19
19
1.81
7768--7830
30
2.1
31
88
5
94
30
22
12
34
1.91
7768--7843
30
2.5
31
85
6
84
31
22
10
35
1.88
16545--16590
2
23.0
2
100
0
92
50
0
0
50
1.00
20087--20114
2
14.0
2
100
0
56
50
0
0
50
1.00
50980--51004
6
4.2
6
100
0
50
36
48
0
16
1.46
52140--52164
2
12.5
2
100
0
50
48
0
0
52
1.00
61267--61339
37
2.0
37
94
0
128
34
20
21
23
1.97
64446--64497
19
2.7
19
84
0
68
61
0
0
38
0.96
73226--73430
60
3.4
60
97
0
392
33
14
28
23
1.94
81144--81173
8
3.9
8
91
8
53
90
10
0
0
0.47
81141--81175
15
2.4
14
90
9
61
91
8
0
0
0.42
81142--81177
17
2.1
17
89
5
54
88
11
0
0
0.50
87768--87804
6
6.2
6
100
0
74
64
0
0
35
0.94
89721--89751
2
15.5
2
100
0
62
51
0
0
48
1.00
102550--102616
31
2.2
31
97
0
125
41
11
34
11
1.79
103860--108985
333
15.4
326
76
9
3907
32
14
16
36
1.88
114665--114694
14
2.1
14
100
0
60
26
20
20
33
1.97
117939--118306
186
2.0
182
91
3
603
39
16
15
28
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
120880--121000
62
2.0
62
83
6
156
21
14
21
42
1.89
123149--123189
13
3.2
13
83
13
57
24
19
0
56
1.42
123149--123185
18
2.1
18
94
0
65
24
18
0
56
1.41
124600--125827
333
3.8
327
85
6
1518
33
14
16
35
1.89

Tables:   1

The End!