Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012379.1 Corchorus olitorius cultivar O-4 contig12412, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11540

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
595--619
2
12.5
2
100
0
50
48
0
0
52
1.00
2278--2598
171
1.9
175
80
7
388
37
10
14
38
1.81
2450--4964
332
7.7
329
79
7
2307
33
13
16
36
1.89
2450--4895
975
2.5
965
82
6
2784
33
13
16
36
1.88
4964--6456
327
4.6
326
80
9
1350
33
13
16
36
1.87
5787--8443
681
3.9
669
83
6
3026
33
14
15
36
1.89
9760--9785
12
2.2
12
100
0
52
53
0
0
46
1.00
10051--10239
22
8.5
22
69
10
98
36
11
15
37
1.83
10308--10493
22
8.5
21
68
13
90
37
11
17
34
1.85
10713--10754
22
1.9
22
85
0
57
38
9
16
35
1.81

Tables:   1

The End!